Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01275 ATGAATAGAGGAGTGGATGCAGTGATTGATCCAATGATGAACCATGACAAGCATTTAGATTCTCAGCTATGGCATGCCTGCGCTGGTGGGCTGATTCAATTGCCTACTATTAACTCAAAGGTAGTTTACTTCCCCCAGGGCCACGCTGAGCATGCCCAGGGAAATGTCGATTTTGGGAATGCTCGAATTCCTTCAATCATTCCTTGCAGGGTATCTGCCATAAGACATATGGCAGATCCCGAAACTGATGAGGTTTTTGCTAAGATAAAGTTGAGTCCACTGGGGAACAATGATTTCAGTTTGGATAATGATGATGATTTTCTAGGTCACAGTGAAATTAAGAGTCAGGATAAACCTACCTCGTTTGCTAAGACATTGACACAATCTGATGCAAACAATGGTGGAGGGTTCTCTGTGCCTCGTTATTGTGCGGAGACAATCTTTCCCCGGTTGGATTACTCGGTAGAGCCTCCTGTTCAGACTATTCTTGCCAAGGATGTTCATGGTGAGATTTGGAAGTTTAGGCATATATATAGAGGAACACCACGTCGTCATCTTTTGACGACTGGGTGGAGTAATTTTGTAAATCAGAAGAAACTTGTTGCTGGGGACTCGATTGTTTTCTTGAGGGCAGAAACTGGCGATCTTTGTATTGGAGTTAGACGAGCCAAGAGGGGCATTGGTTGTGGAATTGATTACTCACCTGGCTGGAACCCAACTAATTCAGGCTCTTCACTTGTGGGGTATTCAGATTATATGAGGGAGAGTGAAGGTAGATTGGGGAGAAGAAACACAAATGGGAATCTGAGTGGGAGAGTGAAGGTTGAATCTGTCATTGAAGCTGCAATGCTTGCGGCCAGTGGCCAGCCCTTTGAGATTGTGTACTACCCATGTGCTGGTACTCCAGAGTTTGTTGTTAAGGCCTCTAGTATAAGGAGTGCAATGCAAATTCACTGGTATTCTGCTATGAGATTCAAGATGCCTTTTGAAACTGAGGATTCATCTCGAATAAGCTGGTTCATGGGAACTATATCTTCTATCCAGGCAGCTGATCCTATTCGGTGGCCTGATTCTCCATGGCGAATGCTGCAGGTGACATGGGATGAGCCAGATTTGCTGCAAAATGTAAAGAGTGTCAACCCATGGTTGGTTGAAGTGGTAGTAAATATGCCAGCTATCCATGTCTCCCCCTTCTCGCCACCGAGAAAGAAGCCGCGCTTTCCACTTCAAGCAGATACTTCTGGTTTTGGTCACCTTCCAATGCCATCGTTTTCCACCAATATGTTTGACACAACTAACCCCTTACAAAGTATTACCGCTAACAAAATTCCTGCAGGCATACAGGGAGCCAGGCATACTCAATTTGGACTCTCTTCACCCAACCTCCAAATCAGCAAACTGCTTCCGGGACAATTTTCCCCTGGTCTTAAGCACCTTGATGATGCCACTCCTCTTCCTGGCATCCGAGGCGAAGATATTTTTGGAGGCATGAAAAACCCTGATATATGTTCTCACTGGCTGACAGTGGGAAATCATATCCAAAGCTCGAAAGAAAGCTCAAAGGAGGAAAGCTCAAAAGAGAGCAAAGAAACAAAACCAGCTCATATAATATTGTTTGGCCAACTCATTTTTCCTAACCAACAGAATTCTAACAGCTGCTCTGGAGATACGATGAATGCATCAGATGCAAATCAAGAGAAAGCATCAAATGTTTCTGACGGGTCTGGTTTTTCATCGCAACAAAATGGTTCACTTGAGAATTCATCAGAGGGAGGATCTACCTCGTACAATGGTCAGGACAAATCTGGTCTTAGCTTGGACACTGGTCATTGCAAGGTGTTTATGGAGTTGGAGAATGTTGGTTGTAATCTTGACCTATCAGCCCTCAGGTCATACGAGGAATTATATAGAAAATTAGGCAATATGGTTGGCTTAAGAAGCTCAGAGATGTTGAATTCTGTTCTTTATCAGGATAGACTAGGCGCTACAAAGCTTGTTGGAGAAGAGCCTTTCAGTGAGTTTCTGAAGAAAGCGCAAAAACTAACCATAACCACAGATTCTCGAAGTAGGGACAACATTGATTCTCGAAGTAGGGACAAGATTAGACACATTAGAACGTAG 2121 43.94 MNRGVDAVIDPMMNHDKHLDSQLWHACAGGLIQLPTINSKVVYFPQGHAEHAQGNVDFGNARIPSIIPCRVSAIRHMADPETDEVFAKIKLSPLGNNDFSLDNDDDFLGHSEIKSQDKPTSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSVEPPVQTILAKDVHGEIWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFLRAETGDLCIGVRRAKRGIGCGIDYSPGWNPTNSGSSLVGYSDYMRESEGRLGRRNTNGNLSGRVKVESVIEAAMLAASGQPFEIVYYPCAGTPEFVVKASSIRSAMQIHWYSAMRFKMPFETEDSSRISWFMGTISSIQAADPIRWPDSPWRMLQVTWDEPDLLQNVKSVNPWLVEVVVNMPAIHVSPFSPPRKKPRFPLQADTSGFGHLPMPSFSTNMFDTTNPLQSITANKIPAGIQGARHTQFGLSSPNLQISKLLPGQFSPGLKHLDDATPLPGIRGEDIFGGMKNPDICSHWLTVGNHIQSSKESSKEESSKESKETKPAHIILFGQLIFPNQQNSNSCSGDTMNASDANQEKASNVSDGSGFSSQQNGSLENSSEGGSTSYNGQDKSGLSLDTGHCKVFMELENVGCNLDLSALRSYEELYRKLGNMVGLRSSEMLNSVLYQDRLGATKLVGEEPFSEFLKKAQKLTITTDSRSRDNIDSRSRDKIRHIRT 706
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 22349886 22353623 + MELO3C019801.2.1 Cme03g01275 323286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01275 706 MobiDBLite consensus disorder prediction 686 706 - -
Cme03g01275 706 CDD B3_DNA 121 222 IPR003340 GO:0003677
Cme03g01275 706 Gene3D - 606 691 - -
Cme03g01275 706 PANTHER AUXIN RESPONSE FACTOR 16 12 684 - -
Cme03g01275 706 SMART B3_2 122 224 IPR003340 GO:0003677
Cme03g01275 706 Pfam B3 DNA binding domain 122 223 IPR003340 GO:0003677
Cme03g01275 706 ProSiteProfiles B3 DNA-binding domain profile. 122 224 IPR003340 GO:0003677
Cme03g01275 706 ProSiteProfiles PB1 domain profile. 608 688 IPR000270 GO:0005515
Cme03g01275 706 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 12 684 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cme03g01275 706 Gene3D - 320 391 - -
Cme03g01275 706 MobiDBLite consensus disorder prediction 550 601 - -
Cme03g01275 706 SUPERFAMILY DNA-binding pseudobarrel domain 106 224 IPR015300 -
Cme03g01275 706 Gene3D - 120 224 IPR015300 -
Cme03g01275 706 Pfam Auxin response factor 281 364 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01275 Cme-Chr3:22349886 Cme08g02302 Cme-Chr8:30020233 0 dispersed
Cme03g01275 Cme-Chr3:22349886 Cme12g01152 Cme-Chr12:19599255 1.91E-75 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41026 PF02362 B3 1.80E-20 CL0405 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01275 - - cmo:103496426 1382.85