Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01283 ATGGCGAAGGACTACCAGGATCCGCCACCAGTGCCGCTAATAGACGGCGTGGAGATAAGGAAATGGTCGTTCTATAGAGCTCTGATTGCGGAGTTCATGGCGACTCTGCTTTTCCTGTATGTGACGGTGTTGACGGTGATCGGGTACAAAGCGGAAACGCATGGTATGGGGAAGAAGAACGTGGATTCTTGTGGAGGAGTTGGGATTCTGGGAATAGCTTGGGCTTTTGGAGGAATGATCTTCGTTCTTGTTTACTGTACTGCTGGAATTTCAGGGGGCCACATAAACCCAGCAGTGACATTTGGGCTTTTGTTGGGCCGAAAGGTGTCACTTGTGCGAGCCGTGATGTACATGGTGGCCCAATGTTTGGGGGCCATCAGTGGAGTTGGGCTTGTCAAGGCCTTCCAGAAGGCCCACTTCCAGAAGCACGGCGGCGGGGCTAATGGGGTTTCCGATGGCTACACCATCGGCACTGGACTGGTCGCCGAGATTGTTGGCACTTTTGTGTTGGTGTACACCGTCTTCTCCGCCACCGACCCTAAACGTAACGCCAGAGATTCCCATGTTCCGGTTTTGGCTCCACTTCCAATTGGGTTTGCAGTTTTCATGGTTCATTTGGCTACAATTCCAATCACGGGCACTGGAATCAACCCAGCTAGAAGCTTGGGATCCGCCGTTATTTTAAATGATCAAAAGGCTTGGAATAACCATTGGATATTTTGGGTTGGACCATTTCTTGGAGCAGCCATTGCAGCTTTCTACCACCAATTCATCTTGAGGGCAGGTGCTGTTAAAGCTCTTGGTTCATTCAGAAGCAACTCACATGTGTGA 831 50.54 MAKDYQDPPPVPLIDGVEIRKWSFYRALIAEFMATLLFLYVTVLTVIGYKAETHGMGKKNVDSCGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLLLGRKVSLVRAVMYMVAQCLGAISGVGLVKAFQKAHFQKHGGGANGVSDGYTIGTGLVAEIVGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGSAVILNDQKAWNNHWIFWVGPFLGAAIAAFYHQFILRAGAVKALGSFRSNSHV 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 22393800 22398530 + MELO3C019794.2.1 Cme03g01283 323294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01283 276 ProSitePatterns MIP family signature. 94 102 IPR022357 -
Cme03g01283 276 Gene3D Glycerol uptake facilitator protein. 11 276 IPR023271 -
Cme03g01283 276 SUPERFAMILY Aquaporin-like 18 260 IPR023271 -
Cme03g01283 276 PRINTS Major intrinsic protein family signature 26 45 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme03g01283 276 PRINTS Major intrinsic protein family signature 76 100 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme03g01283 276 PRINTS Major intrinsic protein family signature 113 132 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme03g01283 276 PRINTS Major intrinsic protein family signature 162 180 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme03g01283 276 PRINTS Major intrinsic protein family signature 198 220 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme03g01283 276 PRINTS Major intrinsic protein family signature 238 258 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme03g01283 276 TIGRFAM MIP: MIP family channel proteins 30 255 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme03g01283 276 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 2 273 IPR034294 -
Cme03g01283 276 CDD MIP 26 258 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme03g01283 276 Pfam Major intrinsic protein 18 255 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme03g01283 276 PANTHER AQUAPORIN PIP2-4-RELATED 2 273 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme03g01283 Cme10g00071 CCT
Cme03g01283 Cme10g00071 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01283 Cme-Chr3:22393800 Cme08g02312 Cme-Chr8:30098090 1.29E-161 dispersed
Cme10g00071 Cme-Chr10:533417 Cme03g01283 Cme-Chr3:22393800 3.67E-160 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01283 K09872 - csv:101205700 540.806