Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01289 ATGGGACAAAGGGTCTTGGAATCCAACACAAAGGAAGAAAGGGAAACAAGATTAATAGGAGCTTATGATGAAGAAGAATCAGCAGCTAGAGCATATGACTTGGCTGCACTTAAGTACTGGGGAACATCAACTTTCACTAATTTTCCGATATCCGATTATGAGAATGAGATTAAGATAATGAAAACTGTGACAAAAGAGGAATACTTGGCCTCTTTAAGAAGGAGAAGTAGCGGTTTCTCAAGAGGTGTATCGAGATATCGAGGAGTCGCGAGACACCATCACAATGGGAGGTGGGAAGCAAGAATTGGGAGAGTTTTTGGCAACAAGTATCTGTACCTTGGAACATATAGTACACAAGAGGAAGCCGCAAGAGCATATGACATAGCCGCAATAGAATACAGAGGCATAAATGCAGTGACCAACTTCGATTTGAACACATACATAAGATGGCTTAAACCTCAAACAAACCCAAATCAAAATCCAAATCCAAAACAACAGCTTTCTCCACCAATTATTTCCTCTTTGTTTCCAATTGATTATAACACAGACAATACCCTAAAATCTTCGAACAAGGATCTTCGTTTTCCTATCTTCCAATCCATCAATAATGATCATGATAATGATGTTATTATTCCCACTACCCCACAAACTTCCCCTCGCACAGCCCTTGGCCTCCTCCTAAAATCCTCCCTTTTCAAACACCTTGTGGAGAAGAACATTGTGAATGCTAATAATGAAGAAGAGGATCCTAAAGATAATGAAGTTAGAGGGCTACTTGACTTTGTTGATGATTCTAATAATCCTTACTTCAATTTGCATTATCCATGTCTAGGAACCACCAATTTATCACTATCTACTACCCCTTTCCATTTCTCCACTTTGATTTGA 888 39.08 MGQRVLESNTKEERETRLIGAYDEEESAARAYDLAALKYWGTSTFTNFPISDYENEIKIMKTVTKEEYLASLRRRSSGFSRGVSRYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLNTYIRWLKPQTNPNQNPNPKQQLSPPIISSLFPIDYNTDNTLKSSNKDLRFPIFQSINNDHDNDVIIPTTPQTSPRTALGLLLKSSLFKHLVEKNIVNANNEEEDPKDNEVRGLLDFVDDSNNPYFNLHYPCLGTTNLSLSTTPFHFSTLI 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 22464069 22468615 - MELO3C019787.2.1 Cme03g01289 323300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01289 295 SUPERFAMILY DNA-binding domain 84 144 IPR016177 GO:0003677
Cme03g01289 295 CDD AP2 84 143 IPR001471 GO:0003700|GO:0006355
Cme03g01289 295 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 9 254 - -
Cme03g01289 295 SUPERFAMILY DNA-binding domain 14 51 IPR016177 GO:0003677
Cme03g01289 295 SMART rav1_2 8 55 IPR001471 GO:0003700|GO:0006355
Cme03g01289 295 SMART rav1_2 85 149 IPR001471 GO:0003700|GO:0006355
Cme03g01289 295 Gene3D AP2/ERF domain 84 145 IPR036955 GO:0003700|GO:0006355
Cme03g01289 295 Gene3D AP2/ERF domain 5 51 IPR036955 GO:0003700|GO:0006355
Cme03g01289 295 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 9 254 - -
Cme03g01289 295 ProSiteProfiles AP2/ERF domain profile. 85 143 IPR001471 GO:0003700|GO:0006355
Cme03g01289 295 ProSiteProfiles AP2/ERF domain profile. 1 49 IPR001471 GO:0003700|GO:0006355
Cme03g01289 295 Pfam AP2 domain 84 135 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01289 Cme-Chr3:22464069 Cme05g01005 Cme-Chr5:14308733 2.15E-11 dispersed
Cme03g01289 Cme-Chr3:22464069 Cme08g00672 Cme-Chr8:4410391 5.18E-11 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41028 PF00847 AP2 1.10E-11 CL0081 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01289 - - csv:101217218 491.886