Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme03g01291 | ATGCTCCGTCTTCAATGGCTTTCTTCTTCCTTGCTTCCCACATTCAACCCCGAACTCTCCCCGGAAACCTTATCCAACCCCAGACTTTGTAGTCTCAACTTCCGTCGCCCACTCCTCACTCTCACTACTACACGCAAACCTTCTCCAAAATGCCAATACTCCTGGAACACGCACCAGCACCAACAATCATCCTTCGAACCGGCCTCTCAGACCGATTCCTTTTCCCCACAGTCCCGCGCCGGAGCTGCTGCTGCATTGCCTCCGAGGTTTTTTGTTGGTCATTCGATATACAAAGGGAAGGCTGCTCTTACAGTTGAGCCTAGGCCACCAGAGTTTACACCTCTAGATTCAGGAGCGTTCAAAATATCCAGGGAAGGATTGGTTATGCTTCAATTTGCTCCTGCAGCTGGTGTTCGTCAATATGATTGGAGCAGAAAACAGGTATTCTCATTATCAGTGACAGAATTGGGAAGTCTCATTGCCCTTGGCCCACGTGAGGCTTGTGAATTTTTTCACGACCCCTATAAGGGAAAAAGTGATGAAGGGAAGGTCAGAAAGATACTAAAAGTGGAGCCTCTTCCGGATGGTTCTGGTCATTTCTTCAATCTCAGCGTTCAGAACAAGCTAATCAACGTGGACGAGAGCATTTATATTCCCATCACCAAAGCAGAGTATACTGTACTTGTTGAGGCTTTCAAGTTTATCTTGCCGCACCTCATGGGTTGGCATACAATTGCAAACACCATGACGAAGCCTGAAGATAGCAGCCGAGGAAATACCGCCAATCCCAGATATGGAGGTGACTTTGAATGGAACAGATAG | 822 | 47.57 | MLRLQWLSSSLLPTFNPELSPETLSNPRLCSLNFRRPLLTLTTTRKPSPKCQYSWNTHQHQQSSFEPASQTDSFSPQSRAGAAAALPPRFFVGHSIYKGKAALTVEPRPPEFTPLDSGAFKISREGLVMLQFAPAAGVRQYDWSRKQVFSLSVTELGSLIALGPREACEFFHDPYKGKSDEGKVRKILKVEPLPDGSGHFFNLSVQNKLINVDESIYIPITKAEYTVLVEAFKFILPHLMGWHTIANTMTKPEDSSRGNTANPRYGGDFEWNR | 273 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 22474231 | 22477271 | - | MELO3C019785.2.1 | Cme03g01291 | 323302 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme03g01291 | 273 | PANTHER | SINGLE-STRANDED DNA-BINDING PROTEIN WHY1, CHLOROPLASTIC | 28 | 273 | - | - | |
Cme03g01291 | 273 | MobiDBLite | consensus disorder prediction | 250 | 273 | - | - | |
Cme03g01291 | 273 | SUPERFAMILY | ssDNA-binding transcriptional regulator domain | 88 | 273 | IPR009044 | GO:0003677|GO:0006355 | |
Cme03g01291 | 273 | Gene3D | Transcriptional Coactivator Pc4; Chain A | 81 | 254 | IPR009044 | GO:0003677|GO:0006355 | |
Cme03g01291 | 273 | Pfam | Whirly transcription factor | 96 | 230 | IPR013742 | GO:0003697|GO:0006355|GO:0006952 | |
Cme03g01291 | 273 | MobiDBLite | consensus disorder prediction | 45 | 78 | - | - | |
Cme03g01291 | 273 | PANTHER | SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL | 28 | 273 | IPR013742 | GO:0003697|GO:0006355|GO:0006952 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme03g01291 | Cme-Chr3:22474231 | Cme09g00121 | Cme-Chr9:897751 | 3.43E-52 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
41029 | PF08536 | Whirly | 3.10E-60 | CL0609 | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme03g01291 | - | - | csv:101203474 | 521.546 |