Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01291 ATGCTCCGTCTTCAATGGCTTTCTTCTTCCTTGCTTCCCACATTCAACCCCGAACTCTCCCCGGAAACCTTATCCAACCCCAGACTTTGTAGTCTCAACTTCCGTCGCCCACTCCTCACTCTCACTACTACACGCAAACCTTCTCCAAAATGCCAATACTCCTGGAACACGCACCAGCACCAACAATCATCCTTCGAACCGGCCTCTCAGACCGATTCCTTTTCCCCACAGTCCCGCGCCGGAGCTGCTGCTGCATTGCCTCCGAGGTTTTTTGTTGGTCATTCGATATACAAAGGGAAGGCTGCTCTTACAGTTGAGCCTAGGCCACCAGAGTTTACACCTCTAGATTCAGGAGCGTTCAAAATATCCAGGGAAGGATTGGTTATGCTTCAATTTGCTCCTGCAGCTGGTGTTCGTCAATATGATTGGAGCAGAAAACAGGTATTCTCATTATCAGTGACAGAATTGGGAAGTCTCATTGCCCTTGGCCCACGTGAGGCTTGTGAATTTTTTCACGACCCCTATAAGGGAAAAAGTGATGAAGGGAAGGTCAGAAAGATACTAAAAGTGGAGCCTCTTCCGGATGGTTCTGGTCATTTCTTCAATCTCAGCGTTCAGAACAAGCTAATCAACGTGGACGAGAGCATTTATATTCCCATCACCAAAGCAGAGTATACTGTACTTGTTGAGGCTTTCAAGTTTATCTTGCCGCACCTCATGGGTTGGCATACAATTGCAAACACCATGACGAAGCCTGAAGATAGCAGCCGAGGAAATACCGCCAATCCCAGATATGGAGGTGACTTTGAATGGAACAGATAG 822 47.57 MLRLQWLSSSLLPTFNPELSPETLSNPRLCSLNFRRPLLTLTTTRKPSPKCQYSWNTHQHQQSSFEPASQTDSFSPQSRAGAAAALPPRFFVGHSIYKGKAALTVEPRPPEFTPLDSGAFKISREGLVMLQFAPAAGVRQYDWSRKQVFSLSVTELGSLIALGPREACEFFHDPYKGKSDEGKVRKILKVEPLPDGSGHFFNLSVQNKLINVDESIYIPITKAEYTVLVEAFKFILPHLMGWHTIANTMTKPEDSSRGNTANPRYGGDFEWNR 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 22474231 22477271 - MELO3C019785.2.1 Cme03g01291 323302

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01291 273 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY1, CHLOROPLASTIC 28 273 - -
Cme03g01291 273 MobiDBLite consensus disorder prediction 250 273 - -
Cme03g01291 273 SUPERFAMILY ssDNA-binding transcriptional regulator domain 88 273 IPR009044 GO:0003677|GO:0006355
Cme03g01291 273 Gene3D Transcriptional Coactivator Pc4; Chain A 81 254 IPR009044 GO:0003677|GO:0006355
Cme03g01291 273 Pfam Whirly transcription factor 96 230 IPR013742 GO:0003697|GO:0006355|GO:0006952
Cme03g01291 273 MobiDBLite consensus disorder prediction 45 78 - -
Cme03g01291 273 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 28 273 IPR013742 GO:0003697|GO:0006355|GO:0006952
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01291 - - - csv:101203474 521.546
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01291 Cme-Chr3:22474231 Cme09g00121 Cme-Chr9:897751 3.43E-52 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme03g01291 . 46 273 Whirly Transcription Factor Family AT1G14410 68.4 5.2e-90 327.8
Cme09g00121 . 62 219 Whirly Transcription Factor Family AT1G71260 64.6 1.2e-56 216.9
Cme03g01291 . 49 273 Whirly Transcription Factor Family AT2G02740 67.7 1.4e-87 319.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007539 1 2 0 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41029 PF08536 Whirly 3.10E-60 CL0609 Cme TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme03g01291 Cme_Chr03 FPKM 0.172 0.100047 0.092197 0.116321 0.960851 0.589312 0.538089 0.0 0.0 0.021253