Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01301 ATGGCTGGCTTTAGTACCTTGTTTGTGTGTTCGTTGTTGTTTTTTGTGGTAGCAAACGCCAATGTAGATGAAGATGAATACTGGAATACTCGTGCCACCGAAGCTAAGAAAGTTGCAAAATCTGCCTTCAATCCTAACCCTGAAATCGTTACCGATAACTTGAACGCCGCCGTTAGTCGAGCGATGGTGGGTCGCAACAGTACGAGAAGGAGCCTGAAGAAGTATAGAGGGCCATGCTTGGCGACGAACCCCATTGATAGATGTTGGAGATGCGATCGAAATTGGGCTAAAAACCGAAAGAAGCTAGCGGAATGTCCATTGGGGTTCGGCCACCAAACCATTGGTGGAAAGAGAGGACCAATCTACGTGGTGACAGACGCGTCTGACGATGACTTAGTTAACCCTAAACCTGGAACCCTACGATATGGTGTGATCCAAAAAGGACCACTTTGGATCATCTTCGGGAGAAGCATGATCATTAGGCTGAGTCAAGAGCTAATGATCTCAAGCGACAAGACCATCGACGCTCGTGGCGCTAACGTCCACATTGCCTTTGGCGCTGGTCTCACCATTCAATTCGTCAACAATGTAATCATTCATAACCTTCACATCCATGACATTATATCCAAATCGGGTGGAATGATTAGAGATTCAGTGGATCATTATGGGTTCAGAACACAAAGCGATGGCGATGGCATCTCCATCTTTGGTTCTTCTCATGTTTGGATCGACCACGTTTCCATGTCCAATTGTGAAGATGGTCTTATTGACGCCATCATGGGTTCCACAGCAATCACTATCTCCAATTGTCATTTCACTCACCACAACGAGGTGATGTTATTTGGAGCGAGCGATAGCTACGCAGAAGACGAAATTATGCAAGTAACCCTAGCATTCAACCACTTTGGGAGAGGATTGGTGCAAAGGATGCCAAGGTGTAGATGGGGTTTCTTCCATGTTGTTAACAATGACTACACTCATTGGCTTATGTACGCGATCGGCGGTAGCCAACATCCTACCATTGTTAGCCAAGGCAATCGTTTCATCGCTCCTCCAAACCCTAACGCCAAACAGGTAACAAAGAGAGAATATGCAATGGAAGACGAATGGAAGCATTGGTCATGGAGATCAGAAGGAGATGAATTGATGAATGGAGCAGTGTTTATTCCATCAGGTGACCAAACAAAAGGGAAGAAGAAAGGCTTATCAAGATATGATATGATTTCCTTCAAGCCAGGAACCTACGTCAGGAGACTTGCACGCTTTTCTGGCACACTTGAATGCACCCCAGGCAAACCATGCTAG 1305 45.82 MAGFSTLFVCSLLFFVVANANVDEDEYWNTRATEAKKVAKSAFNPNPEIVTDNLNAAVSRAMVGRNSTRRSLKKYRGPCLATNPIDRCWRCDRNWAKNRKKLAECPLGFGHQTIGGKRGPIYVVTDASDDDLVNPKPGTLRYGVIQKGPLWIIFGRSMIIRLSQELMISSDKTIDARGANVHIAFGAGLTIQFVNNVIIHNLHIHDIISKSGGMIRDSVDHYGFRTQSDGDGISIFGSSHVWIDHVSMSNCEDGLIDAIMGSTAITISNCHFTHHNEVMLFGASDSYAEDEIMQVTLAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSQHPTIVSQGNRFIAPPNPNAKQVTKREYAMEDEWKHWSWRSEGDELMNGAVFIPSGDQTKGKKKGLSRYDMISFKPGTYVRRLARFSGTLECTPGKPC 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 22538065 22539639 + MELO3C019774.2.1 Cme03g01301 323312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01301 434 Pfam Pectate lyase, N terminus 25 72 IPR007524 GO:0030570
Cme03g01301 434 Pfam Pectate lyase 167 348 IPR002022 -
Cme03g01301 434 SUPERFAMILY Pectin lyase-like 72 396 IPR011050 -
Cme03g01301 434 PANTHER PECTATE LYASE 8 434 - -
Cme03g01301 434 PANTHER PECTATE LYASE 18-RELATED 8 434 IPR045032 GO:0030570
Cme03g01301 434 PRINTS Pollen allergen Amb family signature 105 122 IPR018082 -
Cme03g01301 434 PRINTS Pollen allergen Amb family signature 129 154 IPR018082 -
Cme03g01301 434 PRINTS Pollen allergen Amb family signature 165 181 IPR018082 -
Cme03g01301 434 PRINTS Pollen allergen Amb family signature 229 250 IPR018082 -
Cme03g01301 434 PRINTS Pollen allergen Amb family signature 309 328 IPR018082 -
Cme03g01301 434 PRINTS Pollen allergen Amb family signature 331 350 IPR018082 -
Cme03g01301 434 PRINTS Pollen allergen Amb family signature 373 397 IPR018082 -
Cme03g01301 434 PRINTS Pollen allergen Amb family signature 405 428 IPR018082 -
Cme03g01301 434 SMART amb_all 157 354 IPR002022 -
Cme03g01301 434 Gene3D - 82 427 IPR012334 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01301 Cme-Chr3:22538065 Cme04g01960 Cme-Chr4:27216012 0 dispersed
Cme12g01753 Cme-Chr12:24206297 Cme03g01301 Cme-Chr3:22538065 4.28E-139 dispersed
Cme10g00443 Cme-Chr10:2815338 Cme03g01301 Cme-Chr3:22538065 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01301 K01728 - csv:101217922 859.751