Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme03g01301 | ATGGCTGGCTTTAGTACCTTGTTTGTGTGTTCGTTGTTGTTTTTTGTGGTAGCAAACGCCAATGTAGATGAAGATGAATACTGGAATACTCGTGCCACCGAAGCTAAGAAAGTTGCAAAATCTGCCTTCAATCCTAACCCTGAAATCGTTACCGATAACTTGAACGCCGCCGTTAGTCGAGCGATGGTGGGTCGCAACAGTACGAGAAGGAGCCTGAAGAAGTATAGAGGGCCATGCTTGGCGACGAACCCCATTGATAGATGTTGGAGATGCGATCGAAATTGGGCTAAAAACCGAAAGAAGCTAGCGGAATGTCCATTGGGGTTCGGCCACCAAACCATTGGTGGAAAGAGAGGACCAATCTACGTGGTGACAGACGCGTCTGACGATGACTTAGTTAACCCTAAACCTGGAACCCTACGATATGGTGTGATCCAAAAAGGACCACTTTGGATCATCTTCGGGAGAAGCATGATCATTAGGCTGAGTCAAGAGCTAATGATCTCAAGCGACAAGACCATCGACGCTCGTGGCGCTAACGTCCACATTGCCTTTGGCGCTGGTCTCACCATTCAATTCGTCAACAATGTAATCATTCATAACCTTCACATCCATGACATTATATCCAAATCGGGTGGAATGATTAGAGATTCAGTGGATCATTATGGGTTCAGAACACAAAGCGATGGCGATGGCATCTCCATCTTTGGTTCTTCTCATGTTTGGATCGACCACGTTTCCATGTCCAATTGTGAAGATGGTCTTATTGACGCCATCATGGGTTCCACAGCAATCACTATCTCCAATTGTCATTTCACTCACCACAACGAGGTGATGTTATTTGGAGCGAGCGATAGCTACGCAGAAGACGAAATTATGCAAGTAACCCTAGCATTCAACCACTTTGGGAGAGGATTGGTGCAAAGGATGCCAAGGTGTAGATGGGGTTTCTTCCATGTTGTTAACAATGACTACACTCATTGGCTTATGTACGCGATCGGCGGTAGCCAACATCCTACCATTGTTAGCCAAGGCAATCGTTTCATCGCTCCTCCAAACCCTAACGCCAAACAGGTAACAAAGAGAGAATATGCAATGGAAGACGAATGGAAGCATTGGTCATGGAGATCAGAAGGAGATGAATTGATGAATGGAGCAGTGTTTATTCCATCAGGTGACCAAACAAAAGGGAAGAAGAAAGGCTTATCAAGATATGATATGATTTCCTTCAAGCCAGGAACCTACGTCAGGAGACTTGCACGCTTTTCTGGCACACTTGAATGCACCCCAGGCAAACCATGCTAG | 1305 | 45.82 | MAGFSTLFVCSLLFFVVANANVDEDEYWNTRATEAKKVAKSAFNPNPEIVTDNLNAAVSRAMVGRNSTRRSLKKYRGPCLATNPIDRCWRCDRNWAKNRKKLAECPLGFGHQTIGGKRGPIYVVTDASDDDLVNPKPGTLRYGVIQKGPLWIIFGRSMIIRLSQELMISSDKTIDARGANVHIAFGAGLTIQFVNNVIIHNLHIHDIISKSGGMIRDSVDHYGFRTQSDGDGISIFGSSHVWIDHVSMSNCEDGLIDAIMGSTAITISNCHFTHHNEVMLFGASDSYAEDEIMQVTLAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSQHPTIVSQGNRFIAPPNPNAKQVTKREYAMEDEWKHWSWRSEGDELMNGAVFIPSGDQTKGKKKGLSRYDMISFKPGTYVRRLARFSGTLECTPGKPC | 434 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 22538065 | 22539639 | + | MELO3C019774.2.1 | Cme03g01301 | 323312 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme03g01301 | 434 | Pfam | Pectate lyase, N terminus | 25 | 72 | IPR007524 | GO:0030570 | |
Cme03g01301 | 434 | Pfam | Pectate lyase | 167 | 348 | IPR002022 | - | |
Cme03g01301 | 434 | SUPERFAMILY | Pectin lyase-like | 72 | 396 | IPR011050 | - | |
Cme03g01301 | 434 | PANTHER | PECTATE LYASE | 8 | 434 | - | - | |
Cme03g01301 | 434 | PANTHER | PECTATE LYASE 18-RELATED | 8 | 434 | IPR045032 | GO:0030570 | |
Cme03g01301 | 434 | PRINTS | Pollen allergen Amb family signature | 105 | 122 | IPR018082 | - | |
Cme03g01301 | 434 | PRINTS | Pollen allergen Amb family signature | 129 | 154 | IPR018082 | - | |
Cme03g01301 | 434 | PRINTS | Pollen allergen Amb family signature | 165 | 181 | IPR018082 | - | |
Cme03g01301 | 434 | PRINTS | Pollen allergen Amb family signature | 229 | 250 | IPR018082 | - | |
Cme03g01301 | 434 | PRINTS | Pollen allergen Amb family signature | 309 | 328 | IPR018082 | - | |
Cme03g01301 | 434 | PRINTS | Pollen allergen Amb family signature | 331 | 350 | IPR018082 | - | |
Cme03g01301 | 434 | PRINTS | Pollen allergen Amb family signature | 373 | 397 | IPR018082 | - | |
Cme03g01301 | 434 | PRINTS | Pollen allergen Amb family signature | 405 | 428 | IPR018082 | - | |
Cme03g01301 | 434 | SMART | amb_all | 157 | 354 | IPR002022 | - | |
Cme03g01301 | 434 | Gene3D | - | 82 | 427 | IPR012334 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme03g01301 | Cme-Chr3:22538065 | Cme04g01960 | Cme-Chr4:27216012 | 0 | dispersed | |
Cme12g01753 | Cme-Chr12:24206297 | Cme03g01301 | Cme-Chr3:22538065 | 4.28E-139 | dispersed | |
Cme10g00443 | Cme-Chr10:2815338 | Cme03g01301 | Cme-Chr3:22538065 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme03g01301 | K01728 | - | csv:101217922 | 859.751 |