Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01314 TCTCTCTCCTCAATCCCATTTCTCACTCTATATTCCCCCCCACCATGCTTAATTCTTCCCTCTCTTTCCCTCTCTAATTCACCGGCACCGCCCTTCGCCCCACCGGAAATTCCTTTTGCTTCGGGTTGGAAAAACATGTCTTCCTCTAGACCTAGCCAGTCTTCTAGCAACTCTGGGCGGTCAAGACATAGCACCAGAATTATTGCTCAAACATCTGTTGATGCAAAACTCCATGCTGATTTTGAGGAATCTGGGAATTCATTCGACTACTCAAGTTCAGTGCGTGTCTCTAGTGACGTTAGTGGAGATCACCAACCTAGGTCAGACAAAGTTACAACAGCTTATCTCCACCACATACAGAAAGGGAAGCTTATCCAACCATTTGGTTGCTTATTGGCCTTAGATGAAAAAACATTCAAGGTTATTGCATATAGTGAAAATGCCCCTGAAATGTTGACCATGGTCAGTCATGCTGTCCCAAGCATGGGGGATTACCCTGTTCTTGGCATAGGGACAGATGTGAGGACTATTTTCACTGCACCTAGTGCTTCTGCACTGTTGAAGGCCTTGGGCTTTGGGGAAGTTACACTTCTTAATCCCATCCTAGTGCATTGCAAGACTTCTGGAAAACCCTTTTATGCAATTGTGCATCGTGTTACTGGAAGCTTAATCATTGACTTTGAGCCTGTGAAGCCTTATGAAGTTCCAGTAACAGCAGCTGGAGCCCTACAATCATATAAACTTGCCGCCAAAGCAATTACTAGATTGCAGTCCTTGCCTAGTGGGTGCATGGCTAGGCTTTGTGACACAATGGTTCAAGAAGTTTTTGAACTAACTGGTTATGATAGAGTCATGGCTTATAAATTCCATGATGATGATCATGGGGAAGTGATCTCTGAAGTCACAAAGCCTGGTCTTGAGCCATATCTTGGTTTGCATTATCCGGCCACTGACATTCCTCAAGCCGCACGCTTTTTGTTCATGAAAAATAAAGTCCGCATGATTGTTGATTGTCGTGCAAAACATTTAAAAGTCCTCCAAGATGAGAAATTACAGTTTGATCTAACTTTATGTGGTTCAACATTAAGGGCTCCACACAGTTGCCACTTACAGTATATGGAAAACATGAACTCTATAGCCTCTTTGGTTATGGCAGTTGTGGTTAATGAAGGGGATGAAGATGCCGAGGGCCCTGCTTTGCAGCAACAAAAGAGAAAGAGACTATGGGGGTTAGTAGTATGTCATAATACAAGTCCCAGATTTGTTCCTTTTCCTCTTAGGTATGCTTGTGAGTTTCTTGCTCAAGTATTTGCTATTCACGTGAACAAGGAATTGGAGTTGGAAAATCAAATTATAGAGAAAAATATTCTGCGTACACAGACACTCTTGTGCGACATGCTAATGCGTGATGCTCCTTTAGGTATTGTGTCAAGGAGTCCTAACATAATGGATCTTGTGAAATCTGATGGGGCTGCCTTGTTATATAAGAACAAAATTTGGCGATTGGGCATGACACCCAGTGACTTTCATTTGCGGGACATTGCCTCGTGGCTTTCAGAATATCATATGGATTCAACAGGGTTGAGTACTGACAGCTTGTATGATGCAGGATATCCTGGAGCTCTTGCTTTAGGTGATGAAGTATGTGGGATGGCTGCTGTGCGGATAACTACTAATGATATGATTTTTTGGTTTCGGTCTCACACTGCTTCAGAGATTCGGTGGGGTGGAGCAAAGCATGAACATGGTGAGAAGGACGACGGCAGAAAAATGCATCCAAGATCATCTTTCAAGGCTTTCCTTGAAGTAGTGAAAACAAGAAGTTTGCCTTGGAAGGACTACGAAATGGATGCAATCCACTCTTTACAACTGATCCTTAGAAATACTTTTAAAGATACAGATACAGATGAAATAAATCGAAAATCAATTCAAATGACGCTTGGTGACCTAAAAATTGAAGGGAGGCAAGAATTGGAATCAGTAACAAGTGAAATGGTCAGGTTAATTGAGACAGCTACTGTGCCGATTTTAGCAGTTGATGTAGATGGGTCAATTAATGGGTGGAATACAAAGATTGCTGAATTGACTGGACTCCCTGTGGATAAAGCTATTGGCAAGCATTTGCTTACGTTAGTGGAAGATACTTCTGTAGAAGTTGTCAAGAAAATGTTGTATTTGGCATTGCAAGGACAAGAAGAGCAAAACGTTCAATTTGAGATCAAGACGCATGGTTCTCATATTGAGGTTGGCTCGATCAGGCTTGTTGTAAATGCTTGTGCAAGTAGGGACTTGCGTGAAAATGTTGTGGGGGTGTGTTTTGTAGCACAAGATATCACTGGTCAGAAGATGGTTATGGACAAGTTCACTCGATTAGAAGGTGATTACAAAGCTATTGTACAAAATCCCAATCCATTAATCCCTCCAATATTTGGTTCAGATCAATTTGGATGGTGCTCAGAGTGGAATCCTGCAATGACAAAAGTAACTGGGTGGTCACGTGAAGAAGTAATTGATAAGATGCTTTTAGGAGAGGTTTTTGGCGCGCACAAGTCATGTTGTCGTTTAAAGAATCAAGAAGCTTTTGTTAATCTTGGGGTTGTTTTGAACAATGCCATGAGTGGTCAAGATCCTGAAAAGGTTTCTTTTGGCTTCTTTGCTCGGAACGGGATGTACGTGGAATGTCTTCTGTGTGTCAATAAGATCTTGGATAAGGATGGGGTCATTACTGGGGTTTTTTGCTTTCTGCAGCTTGCTAGTCATGAGTTGCAACAAGCACTAAATATCCAACGATTATGTGAGCAGACTGCTTTGAAGAGATTGAGAGCATTGGGATACATAAAAAGACACGTACAAAATCCTCTTTCTGGGATAATCTTTTCGAGAAGATTATTGGAACGTACCGAGTTGGGAATAGAACAAAGGGAAATTCTGCTTACTAGCTTACACTGTCAAAAGCAAATCTCCAAGGTTCTGGAAGAGTCTGACCTTGATAAAATTATCGACGGGTTCATTGATCTGGAAATGGTGGAGTTTACATTGCATGAAGTATTGAAGGTATCAATCAGTCAAGTAATGATAAAGAGCAAAGGAAAGGCTATCCAGATAGTTAATGAGACTGTAGAAGAGGCCATGTCCGAGACCTTATATGGTGATAGTTTGAGGCTTCAACAAGTCTTGGCAGATTTTCTATTGCTATCAGTTAGTTATGCGCCAGCAGGAGGCCAACTGACAATTTCAACCAACTTGACCAAGGATCAATTAGGAAAGTCGGTTCATCTCGTGCATTTGGAATTCAGGATAACGTATGCTGGAGGCGGTATACCCGAATCGTTGCTGAACGAGATGTTTGGTAGTGAGGAGGAGGCTTCTGAGGAGGGTTTTAGTCTACTCATCAGTAGAAAACTAGTGAAGCTAATGAATGGAGATGTAAGATACATGAGGGAAGCAGGTAAGTCAAGCTTCATCATAACTGTTGAGCTTGCTGCTGCACACAAGACAAGTATGTAG 3507 41.92 SLSSIPFLTLYSPPPCLILPSLSLSNSPAPPFAPPEIPFASGWKNMSSSRPSQSSSNSGRSRHSTRIIAQTSVDAKLHADFEESGNSFDYSSSVRVSSDVSGDHQPRSDKVTTAYLHHIQKGKLIQPFGCLLALDEKTFKVIAYSENAPEMLTMVSHAVPSMGDYPVLGIGTDVRTIFTAPSASALLKALGFGEVTLLNPILVHCKTSGKPFYAIVHRVTGSLIIDFEPVKPYEVPVTAAGALQSYKLAAKAITRLQSLPSGCMARLCDTMVQEVFELTGYDRVMAYKFHDDDHGEVISEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRAKHLKVLQDEKLQFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNEGDEDAEGPALQQQKRKRLWGLVVCHNTSPRFVPFPLRYACEFLAQVFAIHVNKELELENQIIEKNILRTQTLLCDMLMRDAPLGIVSRSPNIMDLVKSDGAALLYKNKIWRLGMTPSDFHLRDIASWLSEYHMDSTGLSTDSLYDAGYPGALALGDEVCGMAAVRITTNDMIFWFRSHTASEIRWGGAKHEHGEKDDGRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNTFKDTDTDEINRKSIQMTLGDLKIEGRQELESVTSEMVRLIETATVPILAVDVDGSINGWNTKIAELTGLPVDKAIGKHLLTLVEDTSVEVVKKMLYLALQGQEEQNVQFEIKTHGSHIEVGSIRLVVNACASRDLRENVVGVCFVAQDITGQKMVMDKFTRLEGDYKAIVQNPNPLIPPIFGSDQFGWCSEWNPAMTKVTGWSREEVIDKMLLGEVFGAHKSCCRLKNQEAFVNLGVVLNNAMSGQDPEKVSFGFFARNGMYVECLLCVNKILDKDGVITGVFCFLQLASHELQQALNIQRLCEQTALKRLRALGYIKRHVQNPLSGIIFSRRLLERTELGIEQREILLTSLHCQKQISKVLEESDLDKIIDGFIDLEMVEFTLHEVLKVSISQVMIKSKGKAIQIVNETVEEAMSETLYGDSLRLQQVLADFLLLSVSYAPAGGQLTISTNLTKDQLGKSVHLVHLEFRITYAGGGIPESLLNEMFGSEEEASEEGFSLLISRKLVKLMNGDVRYMREAGKSSFIITVELAAAHKTSM 1168
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 22648039 22654737 - MELO3C026502.2.1 Cme03g01314 323325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01314 1168 PRINTS Phytochrome signature 776 796 IPR001294 GO:0006355|GO:0009584
Cme03g01314 1168 PRINTS Phytochrome signature 363 384 IPR001294 GO:0006355|GO:0009584
Cme03g01314 1168 PRINTS Phytochrome signature 756 773 IPR001294 GO:0006355|GO:0009584
Cme03g01314 1168 PRINTS Phytochrome signature 178 200 IPR001294 GO:0006355|GO:0009584
Cme03g01314 1168 PRINTS Phytochrome signature 475 495 IPR001294 GO:0006355|GO:0009584
Cme03g01314 1168 PRINTS Phytochrome signature 683 698 IPR001294 GO:0006355|GO:0009584
Cme03g01314 1168 PRINTS Phytochrome signature 278 297 IPR001294 GO:0006355|GO:0009584
Cme03g01314 1168 PRINTS Phytochrome signature 664 680 IPR001294 GO:0006355|GO:0009584
Cme03g01314 1168 PRINTS Phytochrome signature 593 611 IPR001294 GO:0006355|GO:0009584
Cme03g01314 1168 PRINTS Phytochrome signature 560 579 IPR001294 GO:0006355|GO:0009584
Cme03g01314 1168 PANTHER PHYTOCHROME A 46 1164 - -
Cme03g01314 1168 SMART gaf_1 263 455 IPR003018 GO:0005515
Cme03g01314 1168 PANTHER TWO-COMPONENT HISTIDINE KINASE 46 1164 - -
Cme03g01314 1168 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1050 1160 IPR003594 -
Cme03g01314 1168 Coils Coil 442 462 - -
Cme03g01314 1168 Gene3D - 1001 1166 IPR036890 -
Cme03g01314 1168 PIRSF Phytochrome_conventional 44 1168 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Cme03g01314 1168 Pfam GAF domain 266 445 IPR003018 GO:0005515
Cme03g01314 1168 Gene3D PAS domain 119 366 - -
Cme03g01314 1168 ProSiteProfiles Histidine kinase domain profile. 945 1164 IPR005467 -
Cme03g01314 1168 Pfam Phytochrome region 458 632 IPR013515 GO:0006355|GO:0009584
Cme03g01314 1168 ProSiteProfiles PAS repeat profile. 661 731 IPR000014 -
Cme03g01314 1168 SUPERFAMILY PYP-like sensor domain (PAS domain) 119 231 IPR035965 -
Cme03g01314 1168 Gene3D PAS domain 656 793 - -
Cme03g01314 1168 SMART HKATPase_4 1050 1162 IPR003594 -
Cme03g01314 1168 SUPERFAMILY PYP-like sensor domain (PAS domain) 808 914 IPR035965 -
Cme03g01314 1168 SUPERFAMILY GAF domain-like 243 442 - -
Cme03g01314 1168 TIGRFAM sensory_box: PAS domain S-box protein 668 784 IPR000014 -
Cme03g01314 1168 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 996 1157 IPR036890 -
Cme03g01314 1168 SMART HisKA_10 938 1002 IPR003661 GO:0000155|GO:0007165
Cme03g01314 1168 Gene3D - 244 606 IPR029016 -
Cme03g01314 1168 SUPERFAMILY PYP-like sensor domain (PAS domain) 667 774 IPR035965 -
Cme03g01314 1168 MobiDBLite consensus disorder prediction 43 64 - -
Cme03g01314 1168 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 263 435 IPR016132 -
Cme03g01314 1168 Pfam PAS fold 114 230 IPR013654 GO:0006355
Cme03g01314 1168 CDD PAS 805 916 IPR000014 -
Cme03g01314 1168 SMART pas_2 663 729 IPR000014 -
Cme03g01314 1168 SMART pas_2 793 862 IPR000014 -
Cme03g01314 1168 SUPERFAMILY GAF domain-like 453 630 - -
Cme03g01314 1168 Gene3D - 450 623 IPR043150 -
Cme03g01314 1168 ProSiteProfiles PAS repeat profile. 794 846 IPR000014 -
Cme03g01314 1168 Pfam PAS fold 794 916 IPR013767 GO:0006355
Cme03g01314 1168 Pfam PAS fold 664 778 IPR013767 GO:0006355
Cme03g01314 1168 CDD PAS 672 778 IPR000014 -
Cme03g01314 1168 ProSitePatterns Phytochrome chromophore attachment site signature. 363 372 IPR013516 -
Cme03g01314 1168 Gene3D PAS domain 808 922 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00552 Cme-Chr1:4104281 Cme03g01314 Cme-Chr3:22648039 0 dispersed
Cme03g01314 Cme-Chr3:22648039 Cme06g00790 Cme-Chr6:5236998 0 dispersed
Cme03g01314 Cme-Chr3:22648039 Cme03g01317 Cme-Chr3:22681518 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01314 K12120 - csv:101208491 2169.43