Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01315 ATGGATCCACCTACTCTCATCAACCAACCTTCATTTCCAACTACCCCTAATGCCAATCCCAATATCACCCCTTTCAATCTTTCTGAGATCTGGCACTTCCCAATTCATGGCGGAACATCCGTTGAGGATTCTGGACCTGCTCTTGCCCTCAGAATGGCCCATCTCGCTCATAATTTGACCCACTTTGGAGACATTGCCATTGGGAATCCAGAGGTTTCCCCTACTGACCCAGTTCCTTTGCAATTGCAGCAGAGACTACCTCATGGTCATGGCGTTTCCAAGAAGCGCCGTGATTCAGAGCAAGATTCGCCTAAAGTCAGTTCGACTAGTAATGGCAACAATGCCAATGCCAATAGCAGTGCTGGGAATGATTCTGGTGGAAAACGCGTTAAGACAGCGGCGTGTAGAGATGATAATCACGAATCCAAAACAGAAGCGGAACCCAGATCTGGGAAGACCGAACAGAACTCCCAGCCTACTCCAGAACAACCCAAACAGGATTACATCCATGTGCGAGCGAGAAGGGGCCAAGCAACTGATAGCCATAGTCTCGCCGAAAGGGCTAGAAGAGAAAAGATAAGTGAGAGAATGAAAATTCTACAAGACTTGGTCCCTGGGTGTAATAAGGTCATTGGAAAAGCGCTTGTACTTGATGAGATAATAAATTACATTCAATCTCTTCAGCGTCAGGTTGAGTTCTTGTCAATGAAACTCGAAGCAGTTAATTCGAGAATTGGCCCTGGCATTGAAGTGTTTCCTCCAAAAGATTATGGTCAACAAACATTCGATTCAAGCGGTGTTGCGTTTGGTTCACAAGCAACAAGAGAATACAGCCGTGGCTCATCACCAGAATGGTTGCATATGCAGATTGGTGGTGGTTTCGAAAGAACGACGTAG 897 46.27 MDPPTLINQPSFPTTPNANPNITPFNLSEIWHFPIHGGTSVEDSGPALALRMAHLAHNLTHFGDIAIGNPEVSPTDPVPLQLQQRLPHGHGVSKKRRDSEQDSPKVSSTSNGNNANANSSAGNDSGGKRVKTAACRDDNHESKTEAEPRSGKTEQNSQPTPEQPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRIGPGIEVFPPKDYGQQTFDSSGVAFGSQATREYSRGSSPEWLHMQIGGGFERTT 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 22669321 22672245 + MELO3C026503.2.1 Cme03g01315 323326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01315 298 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 177 227 IPR011598 GO:0046983
Cme03g01315 298 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 175 245 IPR036638 GO:0046983
Cme03g01315 298 MobiDBLite consensus disorder prediction 104 126 - -
Cme03g01315 298 Coils Coil 224 244 - -
Cme03g01315 298 Gene3D - 174 246 IPR036638 GO:0046983
Cme03g01315 298 SMART finulus 183 233 IPR011598 GO:0046983
Cme03g01315 298 MobiDBLite consensus disorder prediction 87 165 - -
Cme03g01315 298 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 298 IPR024097 GO:0006355
Cme03g01315 298 MobiDBLite consensus disorder prediction 130 150 - -
Cme03g01315 298 PANTHER BNAC05G07950D PROTEIN 1 298 - -
Cme03g01315 298 CDD bHLH_AtBPE_like 167 252 - -
Cme03g01315 298 Pfam Helix-loop-helix DNA-binding domain 181 228 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01919 Cme-Chr2:25599042 Cme03g01315 Cme-Chr3:22669321 1.17E-96 dispersed
Cme03g01315 Cme-Chr3:22669321 Cme06g00870 Cme-Chr6:5978443 1.27E-46 dispersed
Cme05g01833 Cme-Chr5:27184307 Cme03g01315 Cme-Chr3:22669321 6.34E-23 dispersed
Cme03g01315 Cme-Chr3:22669321 Cme07g00258 Cme-Chr7:1678327 1.84E-43 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41031 PF00010 HLH 2.50E-08 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01315 - - csv:101209222 580.482