Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme03g01315 | ATGGATCCACCTACTCTCATCAACCAACCTTCATTTCCAACTACCCCTAATGCCAATCCCAATATCACCCCTTTCAATCTTTCTGAGATCTGGCACTTCCCAATTCATGGCGGAACATCCGTTGAGGATTCTGGACCTGCTCTTGCCCTCAGAATGGCCCATCTCGCTCATAATTTGACCCACTTTGGAGACATTGCCATTGGGAATCCAGAGGTTTCCCCTACTGACCCAGTTCCTTTGCAATTGCAGCAGAGACTACCTCATGGTCATGGCGTTTCCAAGAAGCGCCGTGATTCAGAGCAAGATTCGCCTAAAGTCAGTTCGACTAGTAATGGCAACAATGCCAATGCCAATAGCAGTGCTGGGAATGATTCTGGTGGAAAACGCGTTAAGACAGCGGCGTGTAGAGATGATAATCACGAATCCAAAACAGAAGCGGAACCCAGATCTGGGAAGACCGAACAGAACTCCCAGCCTACTCCAGAACAACCCAAACAGGATTACATCCATGTGCGAGCGAGAAGGGGCCAAGCAACTGATAGCCATAGTCTCGCCGAAAGGGCTAGAAGAGAAAAGATAAGTGAGAGAATGAAAATTCTACAAGACTTGGTCCCTGGGTGTAATAAGGTCATTGGAAAAGCGCTTGTACTTGATGAGATAATAAATTACATTCAATCTCTTCAGCGTCAGGTTGAGTTCTTGTCAATGAAACTCGAAGCAGTTAATTCGAGAATTGGCCCTGGCATTGAAGTGTTTCCTCCAAAAGATTATGGTCAACAAACATTCGATTCAAGCGGTGTTGCGTTTGGTTCACAAGCAACAAGAGAATACAGCCGTGGCTCATCACCAGAATGGTTGCATATGCAGATTGGTGGTGGTTTCGAAAGAACGACGTAG | 897 | 46.27 | MDPPTLINQPSFPTTPNANPNITPFNLSEIWHFPIHGGTSVEDSGPALALRMAHLAHNLTHFGDIAIGNPEVSPTDPVPLQLQQRLPHGHGVSKKRRDSEQDSPKVSSTSNGNNANANSSAGNDSGGKRVKTAACRDDNHESKTEAEPRSGKTEQNSQPTPEQPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRIGPGIEVFPPKDYGQQTFDSSGVAFGSQATREYSRGSSPEWLHMQIGGGFERTT | 298 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 22669321 | 22672245 | + | MELO3C026503.2.1 | Cme03g01315 | 323326 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme03g01315 | 298 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 177 | 227 | IPR011598 | GO:0046983 | |
Cme03g01315 | 298 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 175 | 245 | IPR036638 | GO:0046983 | |
Cme03g01315 | 298 | MobiDBLite | consensus disorder prediction | 104 | 126 | - | - | |
Cme03g01315 | 298 | Coils | Coil | 224 | 244 | - | - | |
Cme03g01315 | 298 | Gene3D | - | 174 | 246 | IPR036638 | GO:0046983 | |
Cme03g01315 | 298 | SMART | finulus | 183 | 233 | IPR011598 | GO:0046983 | |
Cme03g01315 | 298 | MobiDBLite | consensus disorder prediction | 87 | 165 | - | - | |
Cme03g01315 | 298 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 1 | 298 | IPR024097 | GO:0006355 | |
Cme03g01315 | 298 | MobiDBLite | consensus disorder prediction | 130 | 150 | - | - | |
Cme03g01315 | 298 | PANTHER | BNAC05G07950D PROTEIN | 1 | 298 | - | - | |
Cme03g01315 | 298 | CDD | bHLH_AtBPE_like | 167 | 252 | - | - | |
Cme03g01315 | 298 | Pfam | Helix-loop-helix DNA-binding domain | 181 | 228 | IPR011598 | GO:0046983 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme02g01919 | Cme-Chr2:25599042 | Cme03g01315 | Cme-Chr3:22669321 | 1.17E-96 | dispersed | |
Cme03g01315 | Cme-Chr3:22669321 | Cme06g00870 | Cme-Chr6:5978443 | 1.27E-46 | dispersed | |
Cme05g01833 | Cme-Chr5:27184307 | Cme03g01315 | Cme-Chr3:22669321 | 6.34E-23 | dispersed | |
Cme03g01315 | Cme-Chr3:22669321 | Cme07g00258 | Cme-Chr7:1678327 | 1.84E-43 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
41031 | PF00010 | HLH | 2.50E-08 | No_clan | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme03g01315 | - | - | csv:101209222 | 580.482 |