Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01317 ATGTCATCAACTAGTAGACCAAGCCAAGCTTCCAGGAACACAGGAGGAGGATCTTCTTCTTTCTCACAATCAAGACACAGCTCCAGAATCCTCACTCAAACCTCCATAGATGCAAAGCTTCAATCCCACTTTGAGCAATCCGGTTCTTCCTTCGACTACTCCACTTCAATCCATCTCACCAACAACTCAACTCCCGCACCGCGGCCTGCCGCCACCACCACCGCATACCTTCACCAAATCCAAAAGTCCAACCTCATCCAACCCTTTGGCTGCCTCTTAGCCCTCCACCCCACCACCCTCAAACTCATTGCTTTCAGCCAAAATGCTCCCGAAATGCTCACCACCGTCGCCCACACCGTCCCCGACGGTGACAACCACCCCCTCCTCGCCATCGGCACCGACCTCCGAGCCATCTTCACCGCCCCCACAGCCACCGCCCTCCTCAAGGCCCTTGCCTTCCCCGATGTCACCCTCCTCAACCCTATTCTCGTCCACTCCAAGTCCTCAGGGAAGCCCTTTTACGCCGTTCTCCATCGCGTCACCGGTAGCCTTATCATCGACTTTGAACCTCTCAAACCCGACCAAGTCCCCGTCACCGCTGCAGGAGCTCTCCAATCTTATAAGCTCGCAGCCAAAGCCATCACTCGTCTTCAGGCTCTCCCCAGTGGGAGCCTGGTTAGACTGTGTGACACTATGGTTCAAGAAGTGTTTGAGTTGACAGGTTACGACAGAGTGATGGCTTATAAGTTTCACGATGATGATCATGGCGAGGTTTTTTGCGAGGTTACGAAGCCTGGTCTCGAACCTTATCTTGGTTTGCATTATCCAGCCACTGACATTCCTCAGGCTGCAAGATTTTTGTTCATGAAGAACAAGGTTAGAATGATTGTGGATTGTAGAGCCAAACATGTGAAGGTTATTCAAGATCACAATCTTGATTTTGATTTGACTTTGTGTGGCTCAACTTTAAGAGCTCCTCATTGTTGCCATTTGCAATATATGGAGAATATGGACTCTATTGCCTCATTGGTTATGGCCATTGTGGTAAATGAAGAAGAAGATGAAGAGATCAATTTTGATCATAACAACAACAATGATGCTTCTGTGCAAAAACTTAAGAGGAAAAGATTGTGGGGTTTGGTAGTTTGTCACAACACAACTCCTAGATTTGTCCCCTTTCCTCTTAGATATGCTTGTGAATTTCTAGCTCAAGTTTTTGCCATTCATGTCAACAAGGAATTGGAGTTAGAGAATCAAATTTTGGAGAAAAATATCTTGAGAACTCAAACACTTTTATGTGACATGTTAATGCGTGATGCTCCTTTAGGGATTGTGTCAAGAACTCCTAATATAATGGATCTTGTCAAATCTGATGGAGCCGCATTATTGTACAACAACAAGGTATGGAGATTAGGGATAACCCCTACTGATTTTCATCTTCAAGATATTGCTTCGTGGATTTTGGAGTATCATATGGATTCCACTGGTTTGAGTACTGATAGCTTGTACGATGCCGGGTACCCCGGCGCGCTTGCTCTTGGCGACGTAGTGTGTGGGATGGCTGCTGTGAGGATATCTTCCAACGACATGATTTTCTGGTTTCGATCGCACACTGCATCGGAGATTCGGTGGGGTGGGGCGAAGCATGAGCCGGGTGAGAAGGATGATGGAAGGAAAATGCATCCAAGATCATCTTTTAAGGCTTTTCTTGAAGTGGTTAAGACAAGGAGTTTGCCGTGGAAGGACTTTGAAATGGATGCAATTCATTCTTTGCAACTTATACTAAGAAATACTTTTAAAGATAGAGATGATCACATGAGTGAGATTCATAGAAAATCAATACAAACAACACTTAGTGATCTCAAGATTATAGATGGGAGGCAAGAATTGGAATCAGTAACAAGTGAAATGGTTAGGTTGATTGAAACAGCCACAGTTCCAATTTTGGCTGTTGATGTTGATGGGCTTGTGAATGGTTGGAACTCAAAAATTGCTGAATTGACTGGACTTTCGGTTGACAAAGCCATCGGCAAGAATTTGCTCACATTAGTGGAAGATTCTTCAGTTGAAATTGTCAAGAAGATGTTGGTCTTGGCATTACAAGGTCAAGAGGAAAAAAACGTTCAATTCGAGATAAAAACACACAACAAGGACATCAATTCAGGCTCGATAAGCCTAATAGTAAATGCTTGTGCCAGCAAAGACTTAAGCGAAAATGTGGTGGGAGTATGCTTTGTAGCACAAGACATAACATGTCAAAAGATAGTAATGGACAAATTCACAAAACTACAAGGTGATTACAAAGCCATAGTACAAAACCCTAACCCACTAATCCCCCCAATATTTGGTTTAGATGAATTTGGTTGGTGCACAGAATGGAACTTAGCAATGACGAAACTAAGTGGATGGTCTCGTGAATCAGTTGTCAACAAAATGCTTTTAGGAGAAGTTTTTGGAACACAATTAAACAACTCATCATCATGTTGTTGCCAACTCAAGAATCAAGAAGCATTTGTGAATCTTGGGATTGTGTTGAACAATGCAATGAGTGGGCAAGATCCTGAAAAGAATATTTCGTTTGGATTTTATGGAAGAAATGGGATGTTTGTGGAATGTCTATTATGTGTTAATAAGATATTGGATAGAGATGGTGGAGTTATTGGGGTTTTTTGTTTCTTGCAACTTGCAAGTCAAGAATTGCAACAAGCTTTGAATATTCAAAAATTGTGTGAGAGAACTGCTTTGAATAGGTTGAAGGCATTGGGATATATGAAGAGGCAGATTCAAAATCCACTTTCCGGGATTATTTTCTCAAGGAAAATGTTGCAACAAACTCAGTTGGGAGTGGAACAGAAGCAACTTTTGATTAATAGTGTTAATTGTCAAAGGCAAATCTCCAAGGTTCTTGATGAGTCTCATGATCTTGATCATATTATTCAAGGTTTGGTTGAATTAGAAATGGTTGAGTTTTCATTATATGAAGTATTGGTGGTAGCAATAAGTCAAGTGATGATGAAGAGCAAAGGGAAAGGCATTCAAATAGAAAATGAAGTTGGAGAAGAGATAATGTGTGAGACATTATATGGAGACAATTTGAGACTTCAACAAATAATGGCTGATTTCTTGTTGATATCAGTTCATTATGCACCAACAGGTGGCCAACTTATGCTTTCAACAACTTTTACTAATAACGATCATCATTTTGGGAACTCACTACATCTTCTTCATCTTGAATTCAGGATAACATATGTTGGAGGAGGCATACCAGAATCATTGTTGAATGAGATGTTTGGAAATGATATCATCGATCATGAGGATTCATCTGACGAAGGTTTTAGCCTTTTTATAAGTAGAAAACTTGTGAAGATGATGAATGGAGATGTGAGATATGTGAGAGAAGCTGCCAAATCAACCTTCATTATAACTCTTCAACTTGCTGCTGCTGCTGCTGCTCATAAGTAA 3462 41.68 MSSTSRPSQASRNTGGGSSSFSQSRHSSRILTQTSIDAKLQSHFEQSGSSFDYSTSIHLTNNSTPAPRPAATTTAYLHQIQKSNLIQPFGCLLALHPTTLKLIAFSQNAPEMLTTVAHTVPDGDNHPLLAIGTDLRAIFTAPTATALLKALAFPDVTLLNPILVHSKSSGKPFYAVLHRVTGSLIIDFEPLKPDQVPVTAAGALQSYKLAAKAITRLQALPSGSLVRLCDTMVQEVFELTGYDRVMAYKFHDDDHGEVFCEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRAKHVKVIQDHNLDFDLTLCGSTLRAPHCCHLQYMENMDSIASLVMAIVVNEEEDEEINFDHNNNNDASVQKLKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKELELENQILEKNILRTQTLLCDMLMRDAPLGIVSRTPNIMDLVKSDGAALLYNNKVWRLGITPTDFHLQDIASWILEYHMDSTGLSTDSLYDAGYPGALALGDVVCGMAAVRISSNDMIFWFRSHTASEIRWGGAKHEPGEKDDGRKMHPRSSFKAFLEVVKTRSLPWKDFEMDAIHSLQLILRNTFKDRDDHMSEIHRKSIQTTLSDLKIIDGRQELESVTSEMVRLIETATVPILAVDVDGLVNGWNSKIAELTGLSVDKAIGKNLLTLVEDSSVEIVKKMLVLALQGQEEKNVQFEIKTHNKDINSGSISLIVNACASKDLSENVVGVCFVAQDITCQKIVMDKFTKLQGDYKAIVQNPNPLIPPIFGLDEFGWCTEWNLAMTKLSGWSRESVVNKMLLGEVFGTQLNNSSSCCCQLKNQEAFVNLGIVLNNAMSGQDPEKNISFGFYGRNGMFVECLLCVNKILDRDGGVIGVFCFLQLASQELQQALNIQKLCERTALNRLKALGYMKRQIQNPLSGIIFSRKMLQQTQLGVEQKQLLINSVNCQRQISKVLDESHDLDHIIQGLVELEMVEFSLYEVLVVAISQVMMKSKGKGIQIENEVGEEIMCETLYGDNLRLQQIMADFLLISVHYAPTGGQLMLSTTFTNNDHHFGNSLHLLHLEFRITYVGGGIPESLLNEMFGNDIIDHEDSSDEGFSLFISRKLVKMMNGDVRYVREAAKSTFIITLQLAAAAAAHK 1153
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 22681518 22685874 + MELO3C026506.2.1 Cme03g01317 323328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01317 1153 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 224 404 IPR016132 -
Cme03g01317 1153 PANTHER PHYTOCHROME A 6 1149 - -
Cme03g01317 1153 PANTHER TWO-COMPONENT HISTIDINE KINASE 6 1149 - -
Cme03g01317 1153 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1029 1145 IPR003594 -
Cme03g01317 1153 MobiDBLite consensus disorder prediction 1 28 - -
Cme03g01317 1153 Pfam PAS fold 766 894 IPR013767 GO:0006355
Cme03g01317 1153 Pfam PAS fold 636 750 IPR013767 GO:0006355
Cme03g01317 1153 ProSitePatterns Phytochrome chromophore attachment site signature. 324 333 IPR013516 -
Cme03g01317 1153 SUPERFAMILY PYP-like sensor domain (PAS domain) 80 194 IPR035965 -
Cme03g01317 1153 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 974 1143 IPR036890 -
Cme03g01317 1153 Gene3D PAS domain 79 327 - -
Cme03g01317 1153 ProSiteProfiles PAS repeat profile. 766 818 IPR000014 -
Cme03g01317 1153 Gene3D - 205 575 IPR029016 -
Cme03g01317 1153 CDD PAS 644 750 IPR000014 -
Cme03g01317 1153 CDD PAS 777 894 IPR000014 -
Cme03g01317 1153 PIRSF Phytochrome_conventional 6 1153 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Cme03g01317 1153 Gene3D - 419 592 IPR043150 -
Cme03g01317 1153 SUPERFAMILY PYP-like sensor domain (PAS domain) 639 746 IPR035965 -
Cme03g01317 1153 Coils Coil 411 431 - -
Cme03g01317 1153 Pfam GAF domain 225 414 IPR003018 GO:0005515
Cme03g01317 1153 SMART gaf_1 224 424 IPR003018 GO:0005515
Cme03g01317 1153 SUPERFAMILY GAF domain-like 422 601 - -
Cme03g01317 1153 SMART HKATPase_4 1029 1147 IPR003594 -
Cme03g01317 1153 SMART pas_2 765 837 IPR000014 -
Cme03g01317 1153 SMART pas_2 635 701 IPR000014 -
Cme03g01317 1153 ProSiteProfiles Histidine kinase domain profile. 923 1147 IPR005467 -
Cme03g01317 1153 Gene3D - 960 1141 IPR036890 -
Cme03g01317 1153 Gene3D PAS domain 629 764 - -
Cme03g01317 1153 SUPERFAMILY PYP-like sensor domain (PAS domain) 780 891 IPR035965 -
Cme03g01317 1153 ProSiteProfiles PAS repeat profile. 633 703 IPR000014 -
Cme03g01317 1153 SUPERFAMILY GAF domain-like 204 411 - -
Cme03g01317 1153 PRINTS Phytochrome signature 139 161 IPR001294 GO:0006355|GO:0009584
Cme03g01317 1153 PRINTS Phytochrome signature 239 258 IPR001294 GO:0006355|GO:0009584
Cme03g01317 1153 PRINTS Phytochrome signature 324 345 IPR001294 GO:0006355|GO:0009584
Cme03g01317 1153 PRINTS Phytochrome signature 444 464 IPR001294 GO:0006355|GO:0009584
Cme03g01317 1153 PRINTS Phytochrome signature 529 548 IPR001294 GO:0006355|GO:0009584
Cme03g01317 1153 PRINTS Phytochrome signature 562 580 IPR001294 GO:0006355|GO:0009584
Cme03g01317 1153 PRINTS Phytochrome signature 636 652 IPR001294 GO:0006355|GO:0009584
Cme03g01317 1153 PRINTS Phytochrome signature 655 670 IPR001294 GO:0006355|GO:0009584
Cme03g01317 1153 PRINTS Phytochrome signature 728 745 IPR001294 GO:0006355|GO:0009584
Cme03g01317 1153 PRINTS Phytochrome signature 748 768 IPR001294 GO:0006355|GO:0009584
Cme03g01317 1153 TIGRFAM sensory_box: PAS domain S-box protein 640 753 IPR000014 -
Cme03g01317 1153 Pfam Phytochrome region 427 602 IPR013515 GO:0006355|GO:0009584
Cme03g01317 1153 Pfam PAS fold 75 190 IPR013654 GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01317 Cme-Chr3:22681518 Cme06g00790 Cme-Chr6:5236998 0 dispersed
Cme03g01314 Cme-Chr3:22648039 Cme03g01317 Cme-Chr3:22681518 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01317 K12120 - csv:101219585 2147.09