Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01327 ATGTCGGGATCTGAAACTGGTGTTATCACCAGTAGAGAACCTTTCGGCGTCGGCGTTCAAAATAGCTCCTTACACTCGCAATCGGCGGCTCAGAATATGCGATTAGCCTTTGGCGCCGATGGGACAGGCTACAAGCCTGTAACTCCTTCGACCTCACCGTCTTACCAATCCTCCATGGCCGGTGTTTCTGGTAATGCCGGAATTGAGGGATCGGCTGGTGGAGGAGGAGGAGGAGGAGGGTCTATGTTGCCTCATGGGTTCAACATAAATTCGGTGGGCAGTGAGCAAATAAAGAGGAAGAGGGGTAGGCCGAGGAAGTATGGACCGGATGGCTCCATGGCTTTAGCTTTGGGTTCTGGGCCGCCATCAGGAACTGGATGTTTTCCTCCTTCAAATATGGCTAATTCTGCTTCTGAAGCTTTGGGCTCACCAAATTCATTGAAGAAAACTAAAGGCAGGCCACTTGGTTCTAAGAAAAAGCAACAATTGGAAGCTTTAGGATCGGTTGGCATTGGATTCACCCCACATGTTATTGATGTGAAGGCTGGAGAGGATGTATCGTCAAAAATAATGTCCTTTTCTCAGAATGGCCCCAGAGCTATATGTATCCTGTCTGCAAATGGATCAATATCAAATGTGACTTTACGTCAACCTGCTACATCTGGTGGAACTGTTACTTATGAGGGGCGATTTGAAATTTTGTCTCTTTCGGGTTCGTTTCTCCTGTCTGAAAATGGTGGTCAGAGGAGCAGAACTGGTGGGTTGAGTGTATCTTTGTCCGGTCCAGATGGTCGAGTTTTAGGTGGCAGTGTGGCAGGTCTTCTCACAGCTTTATCTCCTGTTCAGGTGGTGGTTGGAAGTTTCATAGCCGATGGCAACAAGGAACCGAAGCCAGCCCGACAAAATGAACTCACCACTGTCTTACCAATGCTAAACACAGCCGGCTTCGGTCACTTGACAGGTGGAGCCAGCAGTCCATCCCATGGGACGCTGAGTGAGTCTTCCGATGGCAGCCCTGACAGTCCCCTCAACAACAGCTCTGGAGGATGCAACAACAGCAACCATCCACAGGGCATGTCCGGCATGCCATGGAAGTAA 1098 49.64 MSGSETGVITSREPFGVGVQNSSLHSQSAAQNMRLAFGADGTGYKPVTPSTSPSYQSSMAGVSGNAGIEGSAGGGGGGGGSMLPHGFNINSVGSEQIKRKRGRPRKYGPDGSMALALGSGPPSGTGCFPPSNMANSASEALGSPNSLKKTKGRPLGSKKKQQLEALGSVGIGFTPHVIDVKAGEDVSSKIMSFSQNGPRAICILSANGSISNVTLRQPATSGGTVTYEGRFEILSLSGSFLLSENGGQRSRTGGLSVSLSGPDGRVLGGSVAGLLTALSPVQVVVGSFIADGNKEPKPARQNELTTVLPMLNTAGFGHLTGGASSPSHGTLSESSDGSPDSPLNNSSGGCNNSNHPQGMSGMPWK 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 22821262 22825179 + MELO3C026519.2.1 Cme03g01327 323338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01327 365 MobiDBLite consensus disorder prediction 318 359 - -
Cme03g01327 365 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 10-LIKE ISOFORM X1 9 364 - -
Cme03g01327 365 MobiDBLite consensus disorder prediction 125 145 - -
Cme03g01327 365 Pfam Plants and Prokaryotes Conserved (PCC) domain 175 288 IPR005175 -
Cme03g01327 365 SUPERFAMILY AF0104/ALDC/Ptd012-like 173 290 - -
Cme03g01327 365 Gene3D - 175 308 - -
Cme03g01327 365 CDD DUF296 174 288 IPR005175 -
Cme03g01327 365 MobiDBLite consensus disorder prediction 70 157 - -
Cme03g01327 365 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 9 364 IPR039605 GO:0003680
Cme03g01327 365 ProSiteProfiles PPC domain profile profile. 169 310 IPR005175 -
Cme03g01327 365 MobiDBLite consensus disorder prediction 318 365 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme03g01327 Cme07g00024 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01327 Cme-Chr3:22821262 Cme06g02478 Cme-Chr6:31751191 1.09E-72 dispersed
Cme04g00108 Cme-Chr4:858647 Cme03g01327 Cme-Chr3:22821262 1.57E-46 dispersed
Cme05g01821 Cme-Chr5:27092163 Cme03g01327 Cme-Chr3:22821262 3.59E-46 transposed
Cme03g01327 Cme-Chr3:22821262 Cme07g00024 Cme-Chr7:197832 2.10E-122 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01327 - - csv:101211767 670.618