Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01335 ATGGCAGAGAGTTGGGATGGAAGTTATGAGGATTCTGGAAGTGTATCTGATGAGAGTAGTTATTATGCAAGACTGCATATTGAACCTATTTATGATTCGTTTTTGTGCCCTCTAACGAAGCAAGTAATGAGGGATCCTGTTACTATAGAAAGTGGGCAAACGTTCGAACGTGCGGCCATTGAAATGTGGTTCAACGAATGTAAGGAAAGTAGAAGGAGGCCAATTTGTCCTATGACACTTAAGGAATTAAAAAGCACGGAATTGAATCCCAGTATTGCTTTGCGGAATACTATTGAAGAGTGGACTGCTAGGAATGAAGCTGTTCAGCTAGATAAGGCTCGTAAGTCACTTAACTTGGGAAGTCCAGAAAATGAAACTTTGGGATCTTTGAAGTATGTTCAACATGTCTGCCAAAAGGGTTTGTCAAGGCACATCGCACGAAATGCTGGGTTAATACCTATGATTGTTAGCTTGTTGAAGAGCACAAGTCGAAAAGTCCAGTTTAGAGCTTTGGAAACCCTTAGAATTGTGGCACAAGAAGATAGTGAGTGTAAGGAAATGTTAGCTGAAGGTGACACTCTTCACACAGTAGTAAAGTTCCTGCGCCATGAGCGTTCAAAGGAGAAGGAGGAAGCTGTAGCTTTGCTGTATGAGCTTTCCAAGTCTGAAGCCTTGTGTGAAGAGATCGGTTCAGTTAATGGGGCAATTCTTATATTAGTTGGAATGTCGAGCAGTAAATCTGAGAACATCACCACAGTTGAAAATGCTGATAGAACATTAGAAAACCTGGAGGTGTGTGAGAATAACATTCGACAAATGGCTGAATATGGTAGACTGAGGCCTCTTCTGACACAGATTCTTGAAGGCCCTCCAGAAACTAAACAATCCATGGCTGCACATTTGGGCGAGCTAGTTCTAAATAACGATGTAAAACTCTTTGTGGCTCAGACTGTGGGGTCGTCTCTAATTAATATCATGAGAAGTGGTGATAAGCAGTCAAAAGAAGCTGCATTAAAAGCCTTGAACCAGATATCATCGTTTGAGGCTAGTGCAAGAGTTTTGGTTCAGGAAGGGATACTTCCACCTCTCGTTAAGGATCTTTTCACAGTTAGTTCGAATCAACTTCCCATGAAGCTAAAAGAAGTATCTGCAACAATTCTTGCCAATGTTGTGAGCTCAGGCTGTGATTTCAATTCAATTCCAGTAGAACCTAATAATCAGTCTACACTTGTCTCTGAAGATACTATCCATAACCTGCTACAACTCATTAGCAATACCGGTCCAGCTATCGAATGCAAGCTTCTCCAGGTTCTTGTTGGACTTACAAGTTCTCCTTCAACGATTTCAAGTATTGTTAACGCCATTAGAAGCTCTGGTGCAGTTATCAGCTTGGTTCAATTTATTGAAGCCCCACAGCTGGACTTGCGTGTTTCTGCTATAAAGCTCCTCCAGAATATCTCCCCACACTTGAGCCAGGAGCTAGCAGATGCTCTACGTGGTTCAGTTGGCCAGCTGAGCAGTTTATTTAGAATCATAGCGGAAAATACTGGAATCACCGAAGAACAAGCAGCTGCTGTGGGGCTTCTAGCTGATCTCCCAGAAATGGATTTTGGCCTCTCCAGGCAGATGCTTGATGAAGGAGCTTTTGAGTTGGTCTACCTTAGAATTGTTCAACTCCGCCAAGGGGAGACTAGAGGTGGCCGATTTTTAACACCATTCCTTGAAGGCCTCGTTCGAATTCTTGCAAGGATCACAAGCCTTGTACCGTCTGCTGATCGTGAGCCTGATGCTCTTGTATTTTGTCGCAGGCACAATCTTGCTGCTTTATTCATTGAACTGCTTCAGTCTAATGGACTCGACAATGTGCAGATGGTTTCAGCCTTGGCATTGGAAAACTTATCTCTAGAATCCAAGAATTTGACTCAGATACCTACGCTTCCCGAACCTGGATTTTGTGCCTCAATTTTTCCATGTCTCAGCGCACAACCAGTGCTAACAGGGCTGTGTCCTCTCCACCGAGGTACATGTTCTTTGAGGGAAAGTTTTTGTCTTTTGGAGGATAGGGCAGTGAACAAATTAGTAGCCCTATTAGATCACACAAACGAGAAGGTCGTCGAGGCAGCGCTTGCAGCACTATCTACGCTGTTGGACGATGGGGTCGATGTTGAAAAGGGAGTTAACATTTTGTACGACGCAGACGGTGTTCAGCCTATATTTAATGTGTTGCTCGAAAACCGTACAGAGAACCTGATGAGAAGAGCTGTTTGGACGGTCGAGAGGCTGTTGCGCTCAGACGACATAGCAATCAAATTCTCAAATAATCCAAATGTGAGTACAGCTCTTGTTGATGCCTTCCAGCATGGTGATTACAAAACAAGACAAATTGCTGAGCGTGCCTTAAGACATGTTGATAAGTTACCCAACTTCTCCAATATATTTCCTAATCCTAGTAATATGGGATAA 2463 43.2 MAESWDGSYEDSGSVSDESSYYARLHIEPIYDSFLCPLTKQVMRDPVTIESGQTFERAAIEMWFNECKESRRRPICPMTLKELKSTELNPSIALRNTIEEWTARNEAVQLDKARKSLNLGSPENETLGSLKYVQHVCQKGLSRHIARNAGLIPMIVSLLKSTSRKVQFRALETLRIVAQEDSECKEMLAEGDTLHTVVKFLRHERSKEKEEAVALLYELSKSEALCEEIGSVNGAILILVGMSSSKSENITTVENADRTLENLEVCENNIRQMAEYGRLRPLLTQILEGPPETKQSMAAHLGELVLNNDVKLFVAQTVGSSLINIMRSGDKQSKEAALKALNQISSFEASARVLVQEGILPPLVKDLFTVSSNQLPMKLKEVSATILANVVSSGCDFNSIPVEPNNQSTLVSEDTIHNLLQLISNTGPAIECKLLQVLVGLTSSPSTISSIVNAIRSSGAVISLVQFIEAPQLDLRVSAIKLLQNISPHLSQELADALRGSVGQLSSLFRIIAENTGITEEQAAAVGLLADLPEMDFGLSRQMLDEGAFELVYLRIVQLRQGETRGGRFLTPFLEGLVRILARITSLVPSADREPDALVFCRRHNLAALFIELLQSNGLDNVQMVSALALENLSLESKNLTQIPTLPEPGFCASIFPCLSAQPVLTGLCPLHRGTCSLRESFCLLEDRAVNKLVALLDHTNEKVVEAALAALSTLLDDGVDVEKGVNILYDADGVQPIFNVLLENRTENLMRRAVWTVERLLRSDDIAIKFSNNPNVSTALVDAFQHGDYKTRQIAERALRHVDKLPNFSNIFPNPSNMG 820
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 22896656 22909657 - MELO3C026527.2.1 Cme03g01335 323346

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01335 820 ProSiteProfiles U-box domain profile. 29 108 IPR003613 GO:0004842|GO:0016567
Cme03g01335 820 SMART Ubox_2 33 101 IPR003613 GO:0004842|GO:0016567
Cme03g01335 820 CDD RING-Ubox_PUB 34 79 IPR045210 -
Cme03g01335 820 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 30 106 IPR013083 -
Cme03g01335 820 SUPERFAMILY ARM repeat 413 805 IPR016024 -
Cme03g01335 820 Pfam U-box domain 32 106 IPR003613 GO:0004842|GO:0016567
Cme03g01335 820 Gene3D - 313 488 IPR011989 -
Cme03g01335 820 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 815 - -
Cme03g01335 820 Gene3D - 575 811 IPR011989 -
Cme03g01335 820 Gene3D - 107 290 IPR011989 -
Cme03g01335 820 SMART arm_5 721 763 IPR000225 GO:0005515
Cme03g01335 820 SMART arm_5 307 346 IPR000225 GO:0005515
Cme03g01335 820 SMART arm_5 266 306 IPR000225 GO:0005515
Cme03g01335 820 SMART arm_5 448 488 IPR000225 GO:0005515
Cme03g01335 820 SMART arm_5 347 392 IPR000225 GO:0005515
Cme03g01335 820 SMART arm_5 676 717 IPR000225 GO:0005515
Cme03g01335 820 SMART arm_5 139 179 IPR000225 GO:0005515
Cme03g01335 820 SMART arm_5 181 221 IPR000225 GO:0005515
Cme03g01335 820 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 43 1 815 - -
Cme03g01335 820 SUPERFAMILY RING/U-box 18 108 - -
Cme03g01335 820 SUPERFAMILY ARM repeat 126 445 IPR016024 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01335 - - - csv:101217370 1530.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g00660 Cme-Chr2:7770614 Cme03g01335 Cme-Chr3:22896656 2.59E-33 dispersed
Cme03g01335 Cme-Chr3:22896656 Cme12g00199 Cme-Chr12:2053105 2.97E-20 dispersed
Cme03g01335 Cme-Chr3:22896656 Cme11g01052 Cme-Chr11:15335584 2.09E-16 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g75 Blo01g01639 . . . Bpe02g00304 . . Bma01g02413 Cmo05g00990 . . . . . . . . Bhi04g01222 . . . . . . Cla08g00936 Cam08g1383 Cec08g0964 Cco08g1083 Clacu08g1090 . Cre08g0873 . . Cone17ag1462 . . . . Cme03g01335 . Blo18g00742 Bda11g00977 Bda01g01564 Bpe02g01758 . Bma01g00699 . . . . . Cma05g00970 Car05g00854 . Cpe11g00782 . . . . . . . . . . . . . . . Lsi08g00778 . Chy03g00609 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme04g02015 . 1 1043 U-box Gene Family AT5G15400 76.0 0.0e+00 1575.1
Cme03g02175 . 1 637 U-box Gene Family AT1G24330 65.9 2.1e-232 802.4
Cme10g00643 . 1 758 U-box Gene Family AT1G24330 58.6 3.9e-231 798.1
Cme03g02175 . 1 642 U-box Gene Family AT1G67530 66.0 4.7e-232 801.2
Cme10g00643 . 1 758 U-box Gene Family AT1G67530 57.3 2.1e-224 775.8
Cme08g00355 . 1 362 U-box Gene Family AT4G21350 62.6 2.1e-121 432.6
Cme04g01429 . 135 461 U-box Gene Family AT3G07360 54.5 1.7e-79 293.1
Cme10g01508 . 326 513 U-box Gene Family AT1G71020 72.0 5.5e-74 275.4
Cme09g01399 . 251 451 U-box Gene Family AT1G71020 53.5 8.3e-54 208.4
Cme12g00199 CCT 98 267 U-box Gene Family AT1G71020 58.4 2.8e-49 193.4
Cme10g00093 . 210 413 U-box Gene Family AT1G71020 51.7 1.5e-47 187.6
Cme11g01284 CCT 255 424 U-box Gene Family AT1G71020 55.9 2.9e-46 183.3
Cme10g01508 . 72 717 U-box Gene Family AT1G23030 55.8 1.1e-106 384.4
Cme12g00199 CCT 98 467 U-box Gene Family AT1G23030 61.2 4.8e-46 183.0
Cme11g01284 CCT 93 634 U-box Gene Family AT2G28830 51.1 2.7e-99 359.8
Cme12g00199 CCT 5 479 U-box Gene Family AT2G28830 60.0 3.6e-83 306.2
Cme11g01284 CCT 3 648 U-box Gene Family AT3G46510 65.5 2.9e-158 555.8
Cme10g00093 . 5 620 U-box Gene Family AT3G46510 58.7 6.1e-124 441.8
Cme12g00199 CCT 2 482 U-box Gene Family AT3G46510 70.9 2.1e-111 400.2
Cme10g00093 . 9 619 U-box Gene Family AT3G54850 69.1 9.6e-167 583.9
Cme11g01284 CCT 13 627 U-box Gene Family AT3G54850 57.6 9.1e-117 417.9
Cme12g00199 CCT 12 471 U-box Gene Family AT3G54850 63.1 1.3e-78 291.2
Cme11g01052 . 92 622 U-box Gene Family AT5G42340 64.9 7.0e-120 428.3
Cme08g02117 . 9 671 U-box Gene Family AT5G01830 57.7 1.0e-195 680.2
Cme12g01264 . 1 714 U-box Gene Family AT1G29340 67.4 5.9e-245 844.0
Cme06g01534 . 27 442 U-box Gene Family AT5G37490 51.6 1.4e-111 400.2
Cme08g02024 . 8 425 U-box Gene Family AT3G52450 50.3 7.7e-115 411.0
Cme04g02322 . 1 404 U-box Gene Family AT2G35930 54.1 2.2e-119 426.0
Cme05g00240 CCT,ECH 13 412 U-box Gene Family AT2G35930 52.1 3.3e-115 412.1
Cme06g01339 . 9 424 U-box Gene Family AT3G19380 64.2 7.4e-147 517.3
Cme06g01339 . 1 424 U-box Gene Family AT1G49780 64.1 2.9e-151 531.9
Cme08g01071 CCT 1 407 U-box Gene Family AT5G64660 54.9 5.3e-121 431.4
Cme08g01071 CCT 1 407 U-box Gene Family AT5G09800 51.8 6.1e-106 381.3
Cme07g00269 . 1 453 U-box Gene Family AT3G49810 63.2 3.0e-154 542.0
Cme03g02117 . 1 395 U-box Gene Family AT3G49810 65.6 2.0e-142 502.7
Cme07g00269 . 1 453 U-box Gene Family AT5G65920 62.3 1.1e-148 523.5
Cme03g02117 . 1 395 U-box Gene Family AT5G65920 66.3 4.0e-143 505.0
Cme05g02054 . 4 720 U-box Gene Family AT2G19410 50.6 1.5e-209 726.5
Cme03g01705 . 358 701 U-box Gene Family AT2G19410 53.2 1.0e-96 351.7
Cme03g01705 . 392 698 U-box Gene Family AT4G25160 52.8 9.3e-85 312.0
Cme09g00333 . 39 553 U-box Gene Family AT5G40140 55.1 6.8e-92 335.1
Cme02g01939 . 71 581 U-box Gene Family AT5G40140 51.0 4.4e-67 252.7
Cme03g01335 . 4 815 U-box Gene Family AT1G76390 60.6 7.2e-268 920.2
Cme03g01335 . 13 815 U-box Gene Family AT1G20780 61.2 2.5e-276 948.3
Cme10g00643 . 1 767 U-box Gene Family AT1G27910 63.2 3.9e-263 904.4
Cme03g02175 . 1 696 U-box Gene Family AT1G27910 63.8 5.5e-249 857.4
Cme08g00648 . 1 592 U-box Gene Family AT5G67530 74.2 2.4e-260 894.8
Cme06g00245 . 3 157 U-box Gene Family AT5G67530 52.9 3.9e-45 179.9
Cme06g00455 . 36 552 U-box Gene Family AT1G04510 74.1 1.6e-220 762.3
Cme06g00455 . 36 521 U-box Gene Family AT2G33340 73.2 1.1e-207 719.5
Cme04g02015 . 1 1043 U-box Gene Family AT5G15400 76.0 0.0e+00 1575.1
Cme03g02175 . 1 637 U-box Gene Family AT1G24330 65.9 2.1e-232 802.4
Cme10g00643 . 1 758 U-box Gene Family AT1G24330 58.6 3.9e-231 798.1
Cme03g02175 . 1 642 U-box Gene Family AT1G67530 66.0 4.7e-232 801.2
Cme10g00643 . 1 758 U-box Gene Family AT1G67530 57.3 2.1e-224 775.8
Cme08g00355 . 1 362 U-box Gene Family AT4G21350 62.6 2.1e-121 432.6
Cme04g01429 . 135 461 U-box Gene Family AT3G07360 54.5 1.7e-79 293.1
Cme10g01508 . 326 513 U-box Gene Family AT1G71020 72.0 5.5e-74 275.4
Cme09g01399 . 251 451 U-box Gene Family AT1G71020 53.5 8.3e-54 208.4
Cme12g00199 CCT 98 267 U-box Gene Family AT1G71020 58.4 2.8e-49 193.4
Cme10g00093 . 210 413 U-box Gene Family AT1G71020 51.7 1.5e-47 187.6
Cme11g01284 CCT 255 424 U-box Gene Family AT1G71020 55.9 2.9e-46 183.3
Cme10g01508 . 72 717 U-box Gene Family AT1G23030 55.8 1.1e-106 384.4
Cme12g00199 CCT 98 467 U-box Gene Family AT1G23030 61.2 4.8e-46 183.0
Cme11g01284 CCT 93 634 U-box Gene Family AT2G28830 51.1 2.7e-99 359.8
Cme12g00199 CCT 5 479 U-box Gene Family AT2G28830 60.0 3.6e-83 306.2
Cme11g01284 CCT 3 648 U-box Gene Family AT3G46510 65.5 2.9e-158 555.8
Cme10g00093 . 5 620 U-box Gene Family AT3G46510 58.7 6.1e-124 441.8
Cme12g00199 CCT 2 482 U-box Gene Family AT3G46510 70.9 2.1e-111 400.2
Cme10g00093 . 9 619 U-box Gene Family AT3G54850 69.1 9.6e-167 583.9
Cme11g01284 CCT 13 627 U-box Gene Family AT3G54850 57.6 9.1e-117 417.9
Cme12g00199 CCT 12 471 U-box Gene Family AT3G54850 63.1 1.3e-78 291.2
Cme11g01052 . 92 622 U-box Gene Family AT5G42340 64.9 7.0e-120 428.3
Cme08g02117 . 9 671 U-box Gene Family AT5G01830 57.7 1.0e-195 680.2
Cme12g01264 . 1 714 U-box Gene Family AT1G29340 67.4 5.9e-245 844.0
Cme06g01534 . 27 442 U-box Gene Family AT5G37490 51.6 1.4e-111 400.2
Cme08g02024 . 8 425 U-box Gene Family AT3G52450 50.3 7.7e-115 411.0
Cme04g02322 . 1 404 U-box Gene Family AT2G35930 54.1 2.2e-119 426.0
Cme05g00240 CCT,ECH 13 412 U-box Gene Family AT2G35930 52.1 3.3e-115 412.1
Cme06g01339 . 9 424 U-box Gene Family AT3G19380 64.2 7.4e-147 517.3
Cme06g01339 . 1 424 U-box Gene Family AT1G49780 64.1 2.9e-151 531.9
Cme08g01071 CCT 1 407 U-box Gene Family AT5G64660 54.9 5.3e-121 431.4
Cme08g01071 CCT 1 407 U-box Gene Family AT5G09800 51.8 6.1e-106 381.3
Cme07g00269 . 1 453 U-box Gene Family AT3G49810 63.2 3.0e-154 542.0
Cme03g02117 . 1 395 U-box Gene Family AT3G49810 65.6 2.0e-142 502.7
Cme07g00269 . 1 453 U-box Gene Family AT5G65920 62.3 1.1e-148 523.5
Cme03g02117 . 1 395 U-box Gene Family AT5G65920 66.3 4.0e-143 505.0
Cme05g02054 . 4 720 U-box Gene Family AT2G19410 50.6 1.5e-209 726.5
Cme03g01705 . 358 701 U-box Gene Family AT2G19410 53.2 1.0e-96 351.7
Cme03g01705 . 392 698 U-box Gene Family AT4G25160 52.8 9.3e-85 312.0
Cme09g00333 . 39 553 U-box Gene Family AT5G40140 55.1 6.8e-92 335.1
Cme02g01939 . 71 581 U-box Gene Family AT5G40140 51.0 4.4e-67 252.7
Cme03g01335 . 4 815 U-box Gene Family AT1G76390 60.6 7.2e-268 920.2
Cme03g01335 . 13 815 U-box Gene Family AT1G20780 61.2 2.5e-276 948.3
Cme10g00643 . 1 767 U-box Gene Family AT1G27910 63.2 3.9e-263 904.4
Cme03g02175 . 1 696 U-box Gene Family AT1G27910 63.8 5.5e-249 857.4
Cme08g00648 . 1 592 U-box Gene Family AT5G67530 74.2 2.4e-260 894.8
Cme06g00245 . 3 157 U-box Gene Family AT5G67530 52.9 3.9e-45 179.9
Cme06g00455 . 36 552 U-box Gene Family AT1G04510 74.1 1.6e-220 762.3
Cme06g00455 . 36 521 U-box Gene Family AT2G33340 73.2 1.1e-207 719.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006312 2 1 2 2 2 1 1 2 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 0 2 2 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme03g01335 Cme_Chr03 FPKM 9.350617 10.763099 7.170897 5.858597 6.2082 3.335666 4.203807 7.663622 3.97362 5.541153