Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01335 ATGGCAGAGAGTTGGGATGGAAGTTATGAGGATTCTGGAAGTGTATCTGATGAGAGTAGTTATTATGCAAGACTGCATATTGAACCTATTTATGATTCGTTTTTGTGCCCTCTAACGAAGCAAGTAATGAGGGATCCTGTTACTATAGAAAGTGGGCAAACGTTCGAACGTGCGGCCATTGAAATGTGGTTCAACGAATGTAAGGAAAGTAGAAGGAGGCCAATTTGTCCTATGACACTTAAGGAATTAAAAAGCACGGAATTGAATCCCAGTATTGCTTTGCGGAATACTATTGAAGAGTGGACTGCTAGGAATGAAGCTGTTCAGCTAGATAAGGCTCGTAAGTCACTTAACTTGGGAAGTCCAGAAAATGAAACTTTGGGATCTTTGAAGTATGTTCAACATGTCTGCCAAAAGGGTTTGTCAAGGCACATCGCACGAAATGCTGGGTTAATACCTATGATTGTTAGCTTGTTGAAGAGCACAAGTCGAAAAGTCCAGTTTAGAGCTTTGGAAACCCTTAGAATTGTGGCACAAGAAGATAGTGAGTGTAAGGAAATGTTAGCTGAAGGTGACACTCTTCACACAGTAGTAAAGTTCCTGCGCCATGAGCGTTCAAAGGAGAAGGAGGAAGCTGTAGCTTTGCTGTATGAGCTTTCCAAGTCTGAAGCCTTGTGTGAAGAGATCGGTTCAGTTAATGGGGCAATTCTTATATTAGTTGGAATGTCGAGCAGTAAATCTGAGAACATCACCACAGTTGAAAATGCTGATAGAACATTAGAAAACCTGGAGGTGTGTGAGAATAACATTCGACAAATGGCTGAATATGGTAGACTGAGGCCTCTTCTGACACAGATTCTTGAAGGCCCTCCAGAAACTAAACAATCCATGGCTGCACATTTGGGCGAGCTAGTTCTAAATAACGATGTAAAACTCTTTGTGGCTCAGACTGTGGGGTCGTCTCTAATTAATATCATGAGAAGTGGTGATAAGCAGTCAAAAGAAGCTGCATTAAAAGCCTTGAACCAGATATCATCGTTTGAGGCTAGTGCAAGAGTTTTGGTTCAGGAAGGGATACTTCCACCTCTCGTTAAGGATCTTTTCACAGTTAGTTCGAATCAACTTCCCATGAAGCTAAAAGAAGTATCTGCAACAATTCTTGCCAATGTTGTGAGCTCAGGCTGTGATTTCAATTCAATTCCAGTAGAACCTAATAATCAGTCTACACTTGTCTCTGAAGATACTATCCATAACCTGCTACAACTCATTAGCAATACCGGTCCAGCTATCGAATGCAAGCTTCTCCAGGTTCTTGTTGGACTTACAAGTTCTCCTTCAACGATTTCAAGTATTGTTAACGCCATTAGAAGCTCTGGTGCAGTTATCAGCTTGGTTCAATTTATTGAAGCCCCACAGCTGGACTTGCGTGTTTCTGCTATAAAGCTCCTCCAGAATATCTCCCCACACTTGAGCCAGGAGCTAGCAGATGCTCTACGTGGTTCAGTTGGCCAGCTGAGCAGTTTATTTAGAATCATAGCGGAAAATACTGGAATCACCGAAGAACAAGCAGCTGCTGTGGGGCTTCTAGCTGATCTCCCAGAAATGGATTTTGGCCTCTCCAGGCAGATGCTTGATGAAGGAGCTTTTGAGTTGGTCTACCTTAGAATTGTTCAACTCCGCCAAGGGGAGACTAGAGGTGGCCGATTTTTAACACCATTCCTTGAAGGCCTCGTTCGAATTCTTGCAAGGATCACAAGCCTTGTACCGTCTGCTGATCGTGAGCCTGATGCTCTTGTATTTTGTCGCAGGCACAATCTTGCTGCTTTATTCATTGAACTGCTTCAGTCTAATGGACTCGACAATGTGCAGATGGTTTCAGCCTTGGCATTGGAAAACTTATCTCTAGAATCCAAGAATTTGACTCAGATACCTACGCTTCCCGAACCTGGATTTTGTGCCTCAATTTTTCCATGTCTCAGCGCACAACCAGTGCTAACAGGGCTGTGTCCTCTCCACCGAGGTACATGTTCTTTGAGGGAAAGTTTTTGTCTTTTGGAGGATAGGGCAGTGAACAAATTAGTAGCCCTATTAGATCACACAAACGAGAAGGTCGTCGAGGCAGCGCTTGCAGCACTATCTACGCTGTTGGACGATGGGGTCGATGTTGAAAAGGGAGTTAACATTTTGTACGACGCAGACGGTGTTCAGCCTATATTTAATGTGTTGCTCGAAAACCGTACAGAGAACCTGATGAGAAGAGCTGTTTGGACGGTCGAGAGGCTGTTGCGCTCAGACGACATAGCAATCAAATTCTCAAATAATCCAAATGTGAGTACAGCTCTTGTTGATGCCTTCCAGCATGGTGATTACAAAACAAGACAAATTGCTGAGCGTGCCTTAAGACATGTTGATAAGTTACCCAACTTCTCCAATATATTTCCTAATCCTAGTAATATGGGATAA 2463 43.2 MAESWDGSYEDSGSVSDESSYYARLHIEPIYDSFLCPLTKQVMRDPVTIESGQTFERAAIEMWFNECKESRRRPICPMTLKELKSTELNPSIALRNTIEEWTARNEAVQLDKARKSLNLGSPENETLGSLKYVQHVCQKGLSRHIARNAGLIPMIVSLLKSTSRKVQFRALETLRIVAQEDSECKEMLAEGDTLHTVVKFLRHERSKEKEEAVALLYELSKSEALCEEIGSVNGAILILVGMSSSKSENITTVENADRTLENLEVCENNIRQMAEYGRLRPLLTQILEGPPETKQSMAAHLGELVLNNDVKLFVAQTVGSSLINIMRSGDKQSKEAALKALNQISSFEASARVLVQEGILPPLVKDLFTVSSNQLPMKLKEVSATILANVVSSGCDFNSIPVEPNNQSTLVSEDTIHNLLQLISNTGPAIECKLLQVLVGLTSSPSTISSIVNAIRSSGAVISLVQFIEAPQLDLRVSAIKLLQNISPHLSQELADALRGSVGQLSSLFRIIAENTGITEEQAAAVGLLADLPEMDFGLSRQMLDEGAFELVYLRIVQLRQGETRGGRFLTPFLEGLVRILARITSLVPSADREPDALVFCRRHNLAALFIELLQSNGLDNVQMVSALALENLSLESKNLTQIPTLPEPGFCASIFPCLSAQPVLTGLCPLHRGTCSLRESFCLLEDRAVNKLVALLDHTNEKVVEAALAALSTLLDDGVDVEKGVNILYDADGVQPIFNVLLENRTENLMRRAVWTVERLLRSDDIAIKFSNNPNVSTALVDAFQHGDYKTRQIAERALRHVDKLPNFSNIFPNPSNMG 820
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 22896656 22909657 - MELO3C026527.2.1 Cme03g01335 323346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01335 820 ProSiteProfiles U-box domain profile. 29 108 IPR003613 GO:0004842|GO:0016567
Cme03g01335 820 SMART Ubox_2 33 101 IPR003613 GO:0004842|GO:0016567
Cme03g01335 820 CDD RING-Ubox_PUB 34 79 IPR045210 -
Cme03g01335 820 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 30 106 IPR013083 -
Cme03g01335 820 SUPERFAMILY ARM repeat 413 805 IPR016024 -
Cme03g01335 820 Pfam U-box domain 32 106 IPR003613 GO:0004842|GO:0016567
Cme03g01335 820 Gene3D - 313 488 IPR011989 -
Cme03g01335 820 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 815 - -
Cme03g01335 820 Gene3D - 575 811 IPR011989 -
Cme03g01335 820 Gene3D - 107 290 IPR011989 -
Cme03g01335 820 SMART arm_5 721 763 IPR000225 GO:0005515
Cme03g01335 820 SMART arm_5 307 346 IPR000225 GO:0005515
Cme03g01335 820 SMART arm_5 266 306 IPR000225 GO:0005515
Cme03g01335 820 SMART arm_5 448 488 IPR000225 GO:0005515
Cme03g01335 820 SMART arm_5 347 392 IPR000225 GO:0005515
Cme03g01335 820 SMART arm_5 676 717 IPR000225 GO:0005515
Cme03g01335 820 SMART arm_5 139 179 IPR000225 GO:0005515
Cme03g01335 820 SMART arm_5 181 221 IPR000225 GO:0005515
Cme03g01335 820 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 43 1 815 - -
Cme03g01335 820 SUPERFAMILY RING/U-box 18 108 - -
Cme03g01335 820 SUPERFAMILY ARM repeat 126 445 IPR016024 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g00660 Cme-Chr2:7770614 Cme03g01335 Cme-Chr3:22896656 2.59E-33 dispersed
Cme03g01335 Cme-Chr3:22896656 Cme12g00199 Cme-Chr12:2053105 2.97E-20 dispersed
Cme03g01335 Cme-Chr3:22896656 Cme11g01052 Cme-Chr11:15335584 2.09E-16 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01335 - - csv:101217370 1530.0