Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme03g01340 | ATGCCTTGCTTTTCTTCTTGTATTTCTCGTACTCAAGAAGGGAGCCGGGTCGAAACTGATAGTTGTATTCGATATGAATCCCGCCATTCTAATAATTCCTCAGGTACATGGAGGGGAAAAGAAGGTGAGAGCAAGCATGAAAGCTGTCCGAAGGGGAGCGCAGCTGCTCGTAGTTTTACGTTTCGTGAACTCGCCATGGCTACAAGAGGTTTCAAGGAAGTAAATTTGCTTGGAGAGGGTGGTTTTGGACGTGTATACAAAGGACGTTTGGAATCAGGACAGATTGTCGCAGTTAAACAGCTTAATCGTGATGGGCTTCAAGGCTTTCAGGAATTTATTGTGGAGGTTCTCATGTTGAGTCTGTTGCACCATCCTAATCTCGTCACCTTGATTGGTTACTGTACTGATGGGGATCAAAGGCTTTTGGTTTATGAGTTCATGCCTATGGGAAGCCTGGAAGATCATCTTTTTGATTTAGGTACTGACAAAAAGCCTTTGAGTTGGAATACAAGGATGAAGATTGCAGTCTCCGCTGCTCGAGGCCTTGAGTATCTCCACTGCAAAGCAAATCCACCAGTCATATACCGTGACTTGAAATCAGCTAATATCTTATTGGACGATGACTTTAATCCTAAGCTTTCCGATTTCGGCCTGGCTAAACTGGGACCTGTTGGTGACAATACTCATGTTTCAACTAGAATAATGGGAACGTATGGATATTGTGCTCCAGAGTATGCCATGAGTGGCAAATTAACCATTAAATCTGATATTTACAGCTTTGGTGTTGTTCTACTTGAGCTCATTACAGGGCGCAAGGTAATTGATATAAAAAGGAGACCAGGAGAGCAGAACCTAGTTGCTTGGTCCCGCCCTCTACTTAAGGACCGGAGAAGGTTTATGGAACTAGTCGATCCTCTTTTGGAAGGACACTTCCCTCTTCGTTGTTTGCAACACGCAGTTGCAATTACTGCAATGTGTCTTCAGGAACAACCATCATTTCGCCCTCTTATTACTGATATTGTTGTAGCACTCGAGTATTTGGCCTCTCAAAGTTGTTTACGAGAACTACGCAGTCATAGGTTTAACAATTCATCTCAAACATCGCCCCCACAACAGAATAAAGACATCCATGCCGAGGAATCAGATCCTTAA | 1152 | 43.49 | MPCFSSCISRTQEGSRVETDSCIRYESRHSNNSSGTWRGKEGESKHESCPKGSAAARSFTFRELAMATRGFKEVNLLGEGGFGRVYKGRLESGQIVAVKQLNRDGLQGFQEFIVEVLMLSLLHHPNLVTLIGYCTDGDQRLLVYEFMPMGSLEDHLFDLGTDKKPLSWNTRMKIAVSAARGLEYLHCKANPPVIYRDLKSANILLDDDFNPKLSDFGLAKLGPVGDNTHVSTRIMGTYGYCAPEYAMSGKLTIKSDIYSFGVVLLELITGRKVIDIKRRPGEQNLVAWSRPLLKDRRRFMELVDPLLEGHFPLRCLQHAVAITAMCLQEQPSFRPLITDIVVALEYLASQSCLRELRSHRFNNSSQTSPPQQNKDIHAEESDP | 383 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 22943619 | 22948376 | + | MELO3C026531.2.1 | Cme03g01340 | 323351 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme03g01340 | 383 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 193 | 205 | IPR008271 | GO:0004672|GO:0006468 | |
Cme03g01340 | 383 | ProSitePatterns | Protein kinases ATP-binding region signature. | 77 | 99 | IPR017441 | GO:0005524 | |
Cme03g01340 | 383 | MobiDBLite | consensus disorder prediction | 361 | 383 | - | - | |
Cme03g01340 | 383 | SMART | serkin_6 | 71 | 347 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme03g01340 | 383 | PANTHER | OS07G0668900 PROTEIN | 27 | 370 | - | - | |
Cme03g01340 | 383 | ProSiteProfiles | Protein kinase domain profile. | 71 | 347 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme03g01340 | 383 | MobiDBLite | consensus disorder prediction | 28 | 51 | - | - | |
Cme03g01340 | 383 | Pfam | Protein kinase domain | 72 | 341 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme03g01340 | 383 | Gene3D | Phosphorylase Kinase; domain 1 | 42 | 146 | - | - | |
Cme03g01340 | 383 | SUPERFAMILY | Protein kinase-like (PK-like) | 52 | 345 | IPR011009 | - | |
Cme03g01340 | 383 | PANTHER | OS07G0668900 PROTEIN | 27 | 370 | - | - | |
Cme03g01340 | 383 | CDD | STKc_IRAK | 77 | 345 | - | - | |
Cme03g01340 | 383 | Gene3D | Transferase(Phosphotransferase) domain 1 | 147 | 367 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cme03g01340 | Cme07g00052 | CCT | |
Cme03g01340 | Cme07g00052 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme03g01340 | Cme-Chr3:22943619 | Cme06g00702 | Cme-Chr6:4544201 | 2.47E-171 | dispersed | |
Cme04g01794 | Cme-Chr4:25628060 | Cme03g01340 | Cme-Chr3:22943619 | 2.18E-84 | transposed | |
Cme08g00269 | Cme-Chr8:1741204 | Cme03g01340 | Cme-Chr3:22943619 | 2.28E-46 | transposed | |
Cme03g01340 | Cme-Chr3:22943619 | Cme07g00052 | Cme-Chr7:319325 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
64750 | PF00069 | Pkinase | 4.00E-47 | CL0016 | Cme | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme03g01340 | - | - | csv:101217131 | 727.628 |