Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01340 ATGCCTTGCTTTTCTTCTTGTATTTCTCGTACTCAAGAAGGGAGCCGGGTCGAAACTGATAGTTGTATTCGATATGAATCCCGCCATTCTAATAATTCCTCAGGTACATGGAGGGGAAAAGAAGGTGAGAGCAAGCATGAAAGCTGTCCGAAGGGGAGCGCAGCTGCTCGTAGTTTTACGTTTCGTGAACTCGCCATGGCTACAAGAGGTTTCAAGGAAGTAAATTTGCTTGGAGAGGGTGGTTTTGGACGTGTATACAAAGGACGTTTGGAATCAGGACAGATTGTCGCAGTTAAACAGCTTAATCGTGATGGGCTTCAAGGCTTTCAGGAATTTATTGTGGAGGTTCTCATGTTGAGTCTGTTGCACCATCCTAATCTCGTCACCTTGATTGGTTACTGTACTGATGGGGATCAAAGGCTTTTGGTTTATGAGTTCATGCCTATGGGAAGCCTGGAAGATCATCTTTTTGATTTAGGTACTGACAAAAAGCCTTTGAGTTGGAATACAAGGATGAAGATTGCAGTCTCCGCTGCTCGAGGCCTTGAGTATCTCCACTGCAAAGCAAATCCACCAGTCATATACCGTGACTTGAAATCAGCTAATATCTTATTGGACGATGACTTTAATCCTAAGCTTTCCGATTTCGGCCTGGCTAAACTGGGACCTGTTGGTGACAATACTCATGTTTCAACTAGAATAATGGGAACGTATGGATATTGTGCTCCAGAGTATGCCATGAGTGGCAAATTAACCATTAAATCTGATATTTACAGCTTTGGTGTTGTTCTACTTGAGCTCATTACAGGGCGCAAGGTAATTGATATAAAAAGGAGACCAGGAGAGCAGAACCTAGTTGCTTGGTCCCGCCCTCTACTTAAGGACCGGAGAAGGTTTATGGAACTAGTCGATCCTCTTTTGGAAGGACACTTCCCTCTTCGTTGTTTGCAACACGCAGTTGCAATTACTGCAATGTGTCTTCAGGAACAACCATCATTTCGCCCTCTTATTACTGATATTGTTGTAGCACTCGAGTATTTGGCCTCTCAAAGTTGTTTACGAGAACTACGCAGTCATAGGTTTAACAATTCATCTCAAACATCGCCCCCACAACAGAATAAAGACATCCATGCCGAGGAATCAGATCCTTAA 1152 43.49 MPCFSSCISRTQEGSRVETDSCIRYESRHSNNSSGTWRGKEGESKHESCPKGSAAARSFTFRELAMATRGFKEVNLLGEGGFGRVYKGRLESGQIVAVKQLNRDGLQGFQEFIVEVLMLSLLHHPNLVTLIGYCTDGDQRLLVYEFMPMGSLEDHLFDLGTDKKPLSWNTRMKIAVSAARGLEYLHCKANPPVIYRDLKSANILLDDDFNPKLSDFGLAKLGPVGDNTHVSTRIMGTYGYCAPEYAMSGKLTIKSDIYSFGVVLLELITGRKVIDIKRRPGEQNLVAWSRPLLKDRRRFMELVDPLLEGHFPLRCLQHAVAITAMCLQEQPSFRPLITDIVVALEYLASQSCLRELRSHRFNNSSQTSPPQQNKDIHAEESDP 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 22943619 22948376 + MELO3C026531.2.1 Cme03g01340 323351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01340 383 ProSitePatterns Serine/Threonine protein kinases active-site signature. 193 205 IPR008271 GO:0004672|GO:0006468
Cme03g01340 383 ProSitePatterns Protein kinases ATP-binding region signature. 77 99 IPR017441 GO:0005524
Cme03g01340 383 MobiDBLite consensus disorder prediction 361 383 - -
Cme03g01340 383 SMART serkin_6 71 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme03g01340 383 PANTHER OS07G0668900 PROTEIN 27 370 - -
Cme03g01340 383 ProSiteProfiles Protein kinase domain profile. 71 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme03g01340 383 MobiDBLite consensus disorder prediction 28 51 - -
Cme03g01340 383 Pfam Protein kinase domain 72 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme03g01340 383 Gene3D Phosphorylase Kinase; domain 1 42 146 - -
Cme03g01340 383 SUPERFAMILY Protein kinase-like (PK-like) 52 345 IPR011009 -
Cme03g01340 383 PANTHER OS07G0668900 PROTEIN 27 370 - -
Cme03g01340 383 CDD STKc_IRAK 77 345 - -
Cme03g01340 383 Gene3D Transferase(Phosphotransferase) domain 1 147 367 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme03g01340 Cme07g00052 CCT
Cme03g01340 Cme07g00052 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01340 Cme-Chr3:22943619 Cme06g00702 Cme-Chr6:4544201 2.47E-171 dispersed
Cme04g01794 Cme-Chr4:25628060 Cme03g01340 Cme-Chr3:22943619 2.18E-84 transposed
Cme08g00269 Cme-Chr8:1741204 Cme03g01340 Cme-Chr3:22943619 2.28E-46 transposed
Cme03g01340 Cme-Chr3:22943619 Cme07g00052 Cme-Chr7:319325 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64750 PF00069 Pkinase 4.00E-47 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01340 - - csv:101217131 727.628