Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01341 GTGTGTTCTCATCGACATGCTTGGACGCAGCCGCAGAATCTTAGAGTTTACAGTCTGACGGAGCTGAAAACGGCCACCAAGAATTTCCGGCCGGATACTATGCTGGGCGAGGGGGGATTTGGAAGGGTTTTTAAAGGATGGGTTGATGAGGCCACTTATGCTCCGTCTAAGGTCGGCGTCGGAATTCCTGTCGCCGTTAAAAAGTCAAACCCCGACAGCTCTCAGGGTCTACGCGAATGGAAGGCAGAAGTGGAATTTTTGGGGAAATTCAGCCATCCCAATGTGGTGAGATTGATCGGATATTGTTGGGAAGAAAAGCAATTTCTTCTCGTCTATGAATACATGCAAAAGGGTAGTTTGGAAAACCACTTATTCCGAAAAGGTGTAGAACCTCTATCATGGGAAACACGAATTAAAATAGCCACCGGGGCGGCTTGTGGTCTAACGTTCCTCCATACGTCTGAGAAGAGCGTTATTTATCGAGATTTTAAGGCCTCAAACATTCTTCTAGACGGGAATTTTAATCCGAAATTGTCAGATTTTGGGCTGGCAAAACTAGGCCCATCCAATGGTAACTCCCACGTAAGCACAAATCCAGTTGGCACCTACGGGTACGCTGCCCCCGAGTACATTGCAACCGGACATTTGTATATAAAAAGTGACGTGTATGGGTTCGGCGTGGTTCTCCTGGAGCTCTTGACGGGACTACGGGCAGTGGACCCAAACCGGCCGAGTGGTTCACACAACTTAGTGGGTTGGGCGGAGCCATCACTGAGCAGCAAGAAGAAGGTCAAGAAACTAATAGACCCAAGGCTTGGGGACGACTACTCGCCCAAAGGAGCCTGGGCCACAGCCGAACTGATCTTAAAATGTTTGGAATCGGACCCAAGGAAACGGCCCTCCATGGAAGAAGTTTTGGTCATTCTAGAAAAAGTTAGTTCTTTTAAAGACAGGCCCAAGGACCCCAAATCACGGGCTAGGACGCCCAGCCATTATTGA 999 48.85 VCSHRHAWTQPQNLRVYSLTELKTATKNFRPDTMLGEGGFGRVFKGWVDEATYAPSKVGVGIPVAVKKSNPDSSQGLREWKAEVEFLGKFSHPNVVRLIGYCWEEKQFLLVYEYMQKGSLENHLFRKGVEPLSWETRIKIATGAACGLTFLHTSEKSVIYRDFKASNILLDGNFNPKLSDFGLAKLGPSNGNSHVSTNPVGTYGYAAPEYIATGHLYIKSDVYGFGVVLLELLTGLRAVDPNRPSGSHNLVGWAEPSLSSKKKVKKLIDPRLGDDYSPKGAWATAELILKCLESDPRKRPSMEEVLVILEKVSSFKDRPKDPKSRARTPSHY 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 22969561 22971468 + MELO3C027420.2.1 Cme03g01341 323352

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01341 332 CDD STKc_IRAK 35 311 - -
Cme03g01341 332 Gene3D Transferase(Phosphotransferase) domain 1 115 327 - -
Cme03g01341 332 Gene3D Phosphorylase Kinase; domain 1 2 114 - -
Cme03g01341 332 SUPERFAMILY Protein kinase-like (PK-like) 6 310 IPR011009 -
Cme03g01341 332 ProSiteProfiles Protein kinase domain profile. 29 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme03g01341 332 ProSitePatterns Protein kinases ATP-binding region signature. 35 68 IPR017441 GO:0005524
Cme03g01341 332 PANTHER OS01G0588500 PROTEIN-RELATED 11 327 - -
Cme03g01341 332 Pfam Protein tyrosine and serine/threonine kinase 33 306 IPR001245 GO:0004672|GO:0006468
Cme03g01341 332 PANTHER SERINE/THREONINE-PROTEIN KINASE CX32, CHLOROPLASTIC-RELATED 11 327 - -
Cme03g01341 332 ProSitePatterns Serine/Threonine protein kinases active-site signature. 158 170 IPR008271 GO:0004672|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01341 - - - csv:101216893 657.521
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01341 Cme-Chr3:22969561 Cme06g02333 Cme-Chr6:30708658 5.63E-138 dispersed
Cme03g01341 Cme-Chr3:22969561 Cme12g00173 Cme-Chr12:1683665 1.17E-130 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g93 . . . . . . . . Cmo05g00995 . . . . . . . . Bhi04g01226 . . . . . . Cla08g00941 . . . . . . . . . Cone20ag0022 . . . Cme03g01341 . . . . . . . . . . . . Cma05g00976 . . Cpe11g00786 . . . . . . . . . . . . . . . Lsi08g00786 . Chy03g00616 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004298 1 1 1 0 0 0 1 1 1 1 1 0 2 1 0 2 1 0 3 1 1 0 0 0 0 2 0 0 0 2 23
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64751 PF07714 PK_Tyr_Ser-Thr 6.20E-47 CL0016 Cme PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme03g01341 Cme_Chr03 FPKM 3.663842 4.919571 3.185898 2.501666 5.007289 0.0 5.147648 1.75917 0.0 1.48905