Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01358 ATGGGTGATGATGGGGAGATGATCATCAAACACGTACACCCCTTAAACTCAAGGTTTAAAAGGGTTTGTGTTTTTTGTGGGAGTAGCTCTGGCAAGAGAAATTGCTACCGTGAAGCAGCCGTCGAACTCGCCCGAGAATTGGTTTCGAGAAGGTTGGATCTTGTTTATGGAGGTGGAAGTATTGGCTTAATGGGGCTTGTCTCTCGTGAGGTTCACAATGGAGGTGGACATGTCATAGGAATTATCCCAAAAACCTTGATGCGTAAAGAGATTACTGGAGAAACAGTTGGGGAGGTCCGACCAGTAGCCGACATGCATCAAAGGAAAGCGGAGATGGCCCGCCATTCTGACTGTTTCATTGCTCTCCCAGAGCTACTCGAAGTCATAACCTGGGCCCAACTCGGCATCCACGACAAGCCGGTGGGTTTGCTGAATGTTCATGGCTATTACAACTCGCTTCTCTCCTTCATTGACAAGGCGGTAGACGACGGCTTCATCATGCCATCTCAACGTAGTATTATCGTATCTGCCCCAAACGCAAAGGAGCTCGTTCAGAAACTCGAGGTTTGGAATACGTGCCGGTTCACGATGGTGTGGTGGCAAAAGCCAAGTGGGAAGCGGCACAAATGGAGCTAA 636 49.06 MGDDGEMIIKHVHPLNSRFKRVCVFCGSSSGKRNCYREAAVELARELVSRRLDLVYGGGSIGLMGLVSREVHNGGGHVIGIIPKTLMRKEITGETVGEVRPVADMHQRKAEMARHSDCFIALPELLEVITWAQLGIHDKPVGLLNVHGYYNSLLSFIDKAVDDGFIMPSQRSIIVSAPNAKELVQKLEVWNTCRFTMVWWQKPSGKRHKWS 211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 23093865 23095895 - MELO3C026548.2.1 Cme03g01358 323369

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01358 211 SUPERFAMILY MCP/YpsA-like 17 187 - -
Cme03g01358 211 Pfam Possible lysine decarboxylase 64 187 IPR031100 -
Cme03g01358 211 PANTHER LOG FAMILY PROTEIN YJL055W 13 194 - -
Cme03g01358 211 Gene3D - 9 189 - -
Cme03g01358 211 PANTHER CYTOKININ RIBOSIDE 5'-MONOPHOSPHATE PHOSPHORIBOHYDROLASE LOGL9-RELATED 13 194 - -
Cme03g01358 211 TIGRFAM TIGR00730: TIGR00730 family protein 20 188 IPR005269 GO:0009691|GO:0016787
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01358 K22522 LOG; cytokinin riboside 5'-monophosphate phosphoribohydrolase [EC:3.2.2.-] - csv:101207180 358.221
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01358 Cme-Chr3:23093865 Cme03g01892 Cme-Chr3:27059197 1.31E-91 dispersed
Cme07g00214 Cme-Chr7:1422079 Cme03g01358 Cme-Chr3:23093865 1.12E-47 dispersed
Cme03g01358 Cme-Chr3:23093865 Cme04g02527 Cme-Chr4:31553526 7.41E-98 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g124 . . . . . . . . Cmo05g01011 . . . . . . . . Bhi04g01557 . . . . . . Cla08g00964 . . . . . . . . . . . . . Cme03g01358 Blo17g00713 . Bda08g01175 . . . . . . . . . Cma05g00993 Car05g00875 . . . . . . . . . . . . . . . . . Lsi08g00804 . Chy03g00633 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000072 8 13 9 10 10 8 15 8 8 8 8 8 15 8 9 12 8 3 15 8 9 9 9 9 7 7 8 15 16 7 287
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme03g01358 Cme_Chr03 FPKM 14.561905 16.436407 38.594193 28.321678 16.53504 14.338171 23.288074 25.083817 24.142923 25.856623