Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01363 ATGGGTGAATATACAGCCAGCAATTCTTCCAATTCAAATTCTCAGGCTAGGAAAATTGATCATACTTTCAGTACCAGGAGACAAAGTAGCCTTAACCCTTTTTGTTTCGCAGAGTTCACAACAATGGCTGGCCGACGGCTAAGGGAAGCAGTAAAGGAAACTCTAATTAGCAATGGGAATGGAGAGTTTGATGATGATACCCACGTTGTGATTGCAGGGCTTACAAATACTTACTCTCAATATGTCGCAACTTTTGAAGAATATGAACAACAAAGATATGAAGCTGCCTCGACTCTCTATGGGCCACACACTCTATCAGCATACATACAAGAGTTCAAGAAACTAGCAAGTGCAATAGCCAAAGGTGAAAAAGTTGCCAAACCAATCGCCTCACCACCAGACCTTTCCTCTGTCCAACTCCGCTTGGTAATGGACCCTTTTGGAGAATCTCCCCCGGACGGTGTAAACTTTGGAGACATTCAACAAGACGTCGAACTACCAAAAGACGGTTGGTTCAAAACTGGGAGCAAACAAAAGCCAACCGCCACATTTTGGAGTGCAAACCCAAGATTTGACCTCTTAACCGAAGGGACGTATGCCTTAGTCGAAAGGCTAGAGAAACAGCGATGGACACCAGCATATGATGACGATGATTTCTCCGTATCTTTTAAATGGAAATTAGACAACACCACATTAATCAACAGCTTAGCGACTATCGAATGGGACATACCGATAGACGCCGATCCAGGTGTGTATAGGCTTCGACACTTCGGATCATCAAGGAGTACGATAAACTCAACCAACATATATTTCACTGGAGCGTCTCGTGCATTTGCTGTGTTCTAA 846 43.74 MGEYTASNSSNSNSQARKIDHTFSTRRQSSLNPFCFAEFTTMAGRRLREAVKETLISNGNGEFDDDTHVVIAGLTNTYSQYVATFEEYEQQRYEAASTLYGPHTLSAYIQEFKKLASAIAKGEKVAKPIASPPDLSSVQLRLVMDPFGESPPDGVNFGDIQQDVELPKDGWFKTGSKQKPTATFWSANPRFDLLTEGTYALVERLEKQRWTPAYDDDDFSVSFKWKLDNTTLINSLATIEWDIPIDADPGVYRLRHFGSSRSTINSTNIYFTGASRAFAVF 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 23128348 23130785 + MELO3C030285.2.1 Cme03g01363 323374

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01363 281 Pfam Neutral/alkaline non-lysosomal ceramidase, C-terminal 112 280 IPR031331 -
Cme03g01363 281 Pfam Neutral/alkaline non-lysosomal ceramidase, N-terminal 37 110 IPR031329 -
Cme03g01363 281 PANTHER NEUTRAL CERAMIDASE 37 280 - -
Cme03g01363 281 PANTHER CERAMIDASE 37 280 IPR006823 GO:0017040|GO:0046514
Cme03g01363 281 Gene3D - 147 281 IPR038445 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01363 K12349 ASAH2; neutral ceramidase [EC:3.5.1.23] - csv:101206698 475.322
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01363 Cme-Chr3:23128348 Cme12g00118 Cme-Chr12:1225245 7.69E-84 dispersed
Cme03g01362 Cme-Chr3:23124609 Cme03g01363 Cme-Chr3:23128348 2.74E-178 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g132 . . Bda01g00717 . . . . . Cmo05g01014 . . . . . . . . Bhi04g01549 . . . Hepe08g1468 . Lcy13g2242 Cla08g00967 Cam08g1416 Cec08g0995 Cco08g1118 Clacu08g1119 . Cre08g0903 . . . Cone20ag0044 . . . Cme03g01363 . Blo18g00754 . Bda01g01551 Bpe02g01747 . Bma01g00710 . . . . . Cma05g00996 Car05g00878 . Cpe11g00805 . . . . . . . . . . . . . . . Lsi08g00809 . Chy03g00636 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0024902 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme03g01363 Cme_Chr03 FPKM 7.819802 8.424848 11.61541 12.168369 9.464046 8.996141 8.78159 21.880289 21.947536 19.721773