Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01365 ATGGAAAACAACTCCTCGCCTGCAACTGGACTTCAGCCTATCCGCTGCAGAGCTGCTGTCTGCCGGAAGCCTGGAGAGCCGCTAGTGATTGAGGAGATCATTGTGGCGCCGCCTATGCCTCGTGAAGTTAGGATTCGGATAATCTGTACTTCTTTGTGTCATAGCGATCTCACTTTCTGGAAATTGAAGGATCCTCCGGGGATATTTCCTAGAATTTTTGGCCACGAGGCTATCGGAGTGGTTGAGAGTGTAGGAAAGGATGTTCATGAAGTTAAGGAAGGAGATACTGTAATCCCAACCTTCATGGCTGACTGTGGGGAATGTAAAGATTGCTTGTCAAATAAGAGCAATCTGTGTACAAATTTCCCTTTCAGCGTGTCTCCAGGGACGCCTCGATATGGGACTAGCAGATTCACAGATTTAAATGGAGAGGTTATTCATCATTTTTTGTTTGTATCAAGTTTCACTGAATACACAGTGGTAGATGTTGTCAATGTAACCAAAGTAGATCCTGCAATCCCTCCAAACAGGGCATGCCTTCTTAGTTGTGGGGTAACAACAGGCGTTGGTGCAACATGGAGAACCGCAAATGTGGAAAAGGGCTCCACTGTTGCCATATTTGGACTGGGGTCCATAGGTTTGGCTGTTGCTGAAGGGGCAAGAATATGTGGAGCAAGCCGGATTATCGGTATCGATATCAACCCAGAGAGATTTGAAACTGCAAAAAAGTTTGGAGTCACTGAATTTGTTAATTCCAGAACTCTTGGCGATAAATCTGTGAGCCAGGCGATTATTGAAATGACTGATGGAGGTGCAGACTATTGCTTTGAATGTGTTGGAAGGGCTTCGTTAGTTGAAGAAGCATTTACATGCTCCAGACAGGGGTGGGGAAAAACAATAGTGTTAGGAGTAGACCAACCTGGAGCACTATTGAATTTTAGCTCTTTTGATGTTCTTCATCGTGGGAAGACGGTCACGGGATCCTTATTTGGAGGGGCAAAGCCTAAATCAGATGTTCCAACACTTGTAAATTGGTATACAGATAAGAAACTTGAGCTGGATAAATTTGTTACACATGAAGTGGGTTTCGAAGATATCAATGAAGCATTCAATTTGCTAATCGAAGGAAAATCCTTGAGATGTGTGATTTGGATGAACAAGTGA 1164 43.9 MENNSSPATGLQPIRCRAAVCRKPGEPLVIEEIIVAPPMPREVRIRIICTSLCHSDLTFWKLKDPPGIFPRIFGHEAIGVVESVGKDVHEVKEGDTVIPTFMADCGECKDCLSNKSNLCTNFPFSVSPGTPRYGTSRFTDLNGEVIHHFLFVSSFTEYTVVDVVNVTKVDPAIPPNRACLLSCGVTTGVGATWRTANVEKGSTVAIFGLGSIGLAVAEGARICGASRIIGIDINPERFETAKKFGVTEFVNSRTLGDKSVSQAIIEMTDGGADYCFECVGRASLVEEAFTCSRQGWGKTIVLGVDQPGALLNFSSFDVLHRGKTVTGSLFGGAKPKSDVPTLVNWYTDKKLELDKFVTHEVGFEDINEAFNLLIEGKSLRCVIWMNK 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 23139200 23142887 - MELO3C026553.2.1 Cme03g01365 323376

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01365 387 PANTHER ALCOHOL DEHYDROGENASE-LIKE 7 10 384 - -
Cme03g01365 387 SUPERFAMILY GroES-like 335 384 IPR011032 -
Cme03g01365 387 Pfam Alcohol dehydrogenase GroES-like domain 41 165 IPR013154 -
Cme03g01365 387 PANTHER ALCOHOL DEHYDROGENASE 10 384 - -
Cme03g01365 387 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 74 88 IPR002328 GO:0008270|GO:0016491
Cme03g01365 387 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 173 349 IPR036291 -
Cme03g01365 387 Gene3D - 19 380 - -
Cme03g01365 387 Pfam Zinc-binding dehydrogenase 212 346 IPR013149 -
Cme03g01365 387 Gene3D - 188 328 - -
Cme03g01365 387 SUPERFAMILY GroES-like 11 196 IPR011032 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01365 K00121 frmA, ADH5, adhC; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] - csv:101206456 751.125
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01365 Cme-Chr3:23139200 Cme03g01849 Cme-Chr3:26790940 1.69E-160 dispersed
Cme03g01364 Cme-Chr3:23128732 Cme03g01365 Cme-Chr3:23139200 0 tandem
Cme03g01365 Cme-Chr3:23139200 Cme03g01366 Cme-Chr3:23152438 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g134 . . . . . . . . Cmo05g01018 . . . . . . . . Bhi04g01547 Tan02g1550 . . Hepe08g1466 . . . . . . . . . . . . . . . . Cme03g01365 Blo17g00721 . Bda08g01180 . . . . . . . . . Cma05g00998 Car05g00880 . Cpe11g00807 . . . . . . . . . . . . . . . Lsi08g00814 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000997 1 5 1 1 0 2 3 2 2 4 2 3 4 4 4 4 3 1 4 3 3 4 3 5 1 4 2 2 4 3 84
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme03g01365 Cme_Chr03 FPKM 1.656338 0.974915 0.985491 1.442097 2.20136 2.079983 1.503361 2.528407 3.200588 2.155232