Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01394 ATGGACGGCGGTGCTCCGTACAATCCACGTACCGTGGAAGAGGTGTTCAGGGATTTCAAGGGCCGTAGAGCTGGTTTAATCAAAGCTCTGACCACTGATGTTGAAGAGTTCTACCAGCAATGTGATCCTGAGAAAGAAAATCTTTGCCTTTATGGATTTCCGAGTGAGCAATGGGAAGTCAATTTACCTGCGGAAGAGGTGCCTCCAGAGCTCCCAGAACCTGCACTTGGCATAAATTTTGCTAGAGACGGGATGCAAGAAAAGGACTGGCTATCATTGGTTGCGGTTCATAGTGATGTTTGGTTGCTCTCTGTGGCATTTTATTTTGGAGCTAGGTTTGGGTTTGATAAGACAGATAGGAAGCGTCTATTTAATATGATAAACGATCTTCCAACAATATTTGAAGTAGTGACAGGGACAGCCAAAAAACAAGTTAAGGATAAATCATCAGTTTCAAATCATAGCAGTAATAAATCTAAATCAAATTCAAAGCGGAGTTCCGAACCCCAAATAAAAAATACAAAAGCTGTTCAATCAAAGGACGAGGAAGAGGAAGGCTTGGAAGAGGAAGACGAGGAAGAACACGGAGAAACACTTTGCGGAGCTTGTGGAGAGAATTATGCATCAGACGAGTTCTGGATTTGCTGTGACATATGTGAGAAATGGTTTCATGGGAAATGTGTGAAGATCACTCCGGCAAGAGCCGAGCACATTAAGCAGTACAAATGTCCTTCTTGCAGCAACAAGAGAATCCGACCCTGA 762 43.31 MDGGAPYNPRTVEEVFRDFKGRRAGLIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDRKRLFNMINDLPTIFEVVTGTAKKQVKDKSSVSNHSSNKSKSNSKRSSEPQIKNTKAVQSKDEEEEGLEEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRIRP 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 23448842 23454520 + MELO3C011479.2.1 Cme03g01394 323405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01394 253 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 4 253 - -
Cme03g01394 253 SUPERFAMILY FYVE/PHD zinc finger 189 250 IPR011011 -
Cme03g01394 253 SMART PHD_3 199 247 IPR001965 -
Cme03g01394 253 MobiDBLite consensus disorder prediction 145 174 - -
Cme03g01394 253 Pfam PHD-finger 200 249 IPR019787 -
Cme03g01394 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 190 248 IPR013083 -
Cme03g01394 253 ProSitePatterns Zinc finger PHD-type signature. 200 246 IPR019786 -
Cme03g01394 253 CDD PHD_AL_plant 199 249 IPR044104 -
Cme03g01394 253 MobiDBLite consensus disorder prediction 145 193 - -
Cme03g01394 253 ProSiteProfiles Zinc finger PHD-type profile. 197 249 IPR019787 -
Cme03g01394 253 PANTHER CPG BINDING PROTEIN 4 253 IPR045104 GO:0006355|GO:0042393
Cme03g01394 253 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02823 Cme-Chr1:35186972 Cme03g01394 Cme-Chr3:23448842 1.05E-122 dispersed
Cme03g01394 Cme-Chr3:23448842 Cme06g02215 Cme-Chr6:28527361 4.35E-114 dispersed
Cme03g01394 Cme-Chr3:23448842 Cme10g01083 Cme-Chr10:9532808 3.24E-117 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41035 PF12165 Alfin 2.10E-69 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01394 - - csv:101208889 467.618