Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01394 ATGGACGGCGGTGCTCCGTACAATCCACGTACCGTGGAAGAGGTGTTCAGGGATTTCAAGGGCCGTAGAGCTGGTTTAATCAAAGCTCTGACCACTGATGTTGAAGAGTTCTACCAGCAATGTGATCCTGAGAAAGAAAATCTTTGCCTTTATGGATTTCCGAGTGAGCAATGGGAAGTCAATTTACCTGCGGAAGAGGTGCCTCCAGAGCTCCCAGAACCTGCACTTGGCATAAATTTTGCTAGAGACGGGATGCAAGAAAAGGACTGGCTATCATTGGTTGCGGTTCATAGTGATGTTTGGTTGCTCTCTGTGGCATTTTATTTTGGAGCTAGGTTTGGGTTTGATAAGACAGATAGGAAGCGTCTATTTAATATGATAAACGATCTTCCAACAATATTTGAAGTAGTGACAGGGACAGCCAAAAAACAAGTTAAGGATAAATCATCAGTTTCAAATCATAGCAGTAATAAATCTAAATCAAATTCAAAGCGGAGTTCCGAACCCCAAATAAAAAATACAAAAGCTGTTCAATCAAAGGACGAGGAAGAGGAAGGCTTGGAAGAGGAAGACGAGGAAGAACACGGAGAAACACTTTGCGGAGCTTGTGGAGAGAATTATGCATCAGACGAGTTCTGGATTTGCTGTGACATATGTGAGAAATGGTTTCATGGGAAATGTGTGAAGATCACTCCGGCAAGAGCCGAGCACATTAAGCAGTACAAATGTCCTTCTTGCAGCAACAAGAGAATCCGACCCTGA 762 43.31 MDGGAPYNPRTVEEVFRDFKGRRAGLIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDRKRLFNMINDLPTIFEVVTGTAKKQVKDKSSVSNHSSNKSKSNSKRSSEPQIKNTKAVQSKDEEEEGLEEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRIRP 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 23448842 23454520 + MELO3C011479.2.1 Cme03g01394 323405

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01394 253 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 4 253 - -
Cme03g01394 253 SUPERFAMILY FYVE/PHD zinc finger 189 250 IPR011011 -
Cme03g01394 253 SMART PHD_3 199 247 IPR001965 -
Cme03g01394 253 MobiDBLite consensus disorder prediction 145 174 - -
Cme03g01394 253 Pfam PHD-finger 200 249 IPR019787 -
Cme03g01394 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 190 248 IPR013083 -
Cme03g01394 253 ProSitePatterns Zinc finger PHD-type signature. 200 246 IPR019786 -
Cme03g01394 253 CDD PHD_AL_plant 199 249 IPR044104 -
Cme03g01394 253 MobiDBLite consensus disorder prediction 145 193 - -
Cme03g01394 253 ProSiteProfiles Zinc finger PHD-type profile. 197 249 IPR019787 -
Cme03g01394 253 PANTHER CPG BINDING PROTEIN 4 253 IPR045104 GO:0006355|GO:0042393
Cme03g01394 253 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01394 - - - csv:101208889 467.618
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02823 Cme-Chr1:35186972 Cme03g01394 Cme-Chr3:23448842 1.05E-122 dispersed
Cme03g01394 Cme-Chr3:23448842 Cme06g02215 Cme-Chr6:28527361 4.35E-114 dispersed
Cme03g01394 Cme-Chr3:23448842 Cme10g01083 Cme-Chr10:9532808 3.24E-117 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme06g02215 . 1 252 Alfin-like Transcription Factor Family AT1G14510 83.7 1.9e-113 405.6
Cme03g01394 . 9 250 Alfin-like Transcription Factor Family AT1G14510 74.4 2.1e-96 349.0
Cme01g02823 . 10 251 Alfin-like Transcription Factor Family AT1G14510 66.5 4.1e-92 334.7
Cme10g01083 . 8 238 Alfin-like Transcription Factor Family AT1G14510 58.9 2.8e-77 285.4
Cme04g02724 . 8 232 Alfin-like Transcription Factor Family AT1G14510 58.3 8.5e-74 273.9
Cme03g01394 . 1 252 Alfin-like Transcription Factor Family AT5G26210 77.2 2.4e-108 388.7
Cme01g02823 . 1 253 Alfin-like Transcription Factor Family AT5G26210 65.1 5.0e-98 354.4
Cme06g02215 . 9 254 Alfin-like Transcription Factor Family AT5G26210 72.8 7.5e-94 340.5
Cme10g01083 . 7 240 Alfin-like Transcription Factor Family AT5G26210 58.3 9.5e-81 297.0
Cme04g02724 . 8 234 Alfin-like Transcription Factor Family AT5G26210 56.5 1.6e-75 279.6
Cme03g01394 . 1 252 Alfin-like Transcription Factor Family AT3G42790 74.0 4.7e-101 364.4
Cme01g02823 . 1 253 Alfin-like Transcription Factor Family AT3G42790 63.8 1.7e-95 345.9
Cme06g02215 . 9 254 Alfin-like Transcription Factor Family AT3G42790 72.0 2.2e-90 328.9
Cme10g01083 . 7 240 Alfin-like Transcription Factor Family AT3G42790 59.8 2.4e-81 298.9
Cme04g02724 . 8 234 Alfin-like Transcription Factor Family AT3G42790 56.3 2.2e-74 275.8
Cme10g01083 . 1 240 Alfin-like Transcription Factor Family AT5G05610 78.4 2.3e-113 405.2
Cme04g02724 . 1 235 Alfin-like Transcription Factor Family AT5G05610 72.6 2.0e-101 365.5
Cme03g01394 . 8 252 Alfin-like Transcription Factor Family AT5G05610 65.3 1.9e-91 332.4
Cme01g02823 . 10 253 Alfin-like Transcription Factor Family AT5G05610 62.9 8.1e-90 327.0
Cme06g02215 . 9 254 Alfin-like Transcription Factor Family AT5G05610 62.2 1.1e-83 306.6
Cme10g01083 . 43 240 Alfin-like Transcription Factor Family AT3G11200 81.6 1.1e-96 349.7
Cme04g02724 . 43 235 Alfin-like Transcription Factor Family AT3G11200 74.3 7.1e-83 303.9
Cme03g01394 . 44 252 Alfin-like Transcription Factor Family AT3G11200 67.5 1.9e-75 279.3
Cme01g02823 . 44 253 Alfin-like Transcription Factor Family AT3G11200 64.8 5.4e-75 277.7
Cme06g02215 . 44 254 Alfin-like Transcription Factor Family AT3G11200 63.0 2.6e-69 258.8
Cme06g02215 . 1 161 Alfin-like Transcription Factor Family AT2G02470 85.1 1.4e-76 283.1
Cme03g01394 . 1 158 Alfin-like Transcription Factor Family AT2G02470 77.8 4.3e-65 245.0
Cme01g02823 . 10 160 Alfin-like Transcription Factor Family AT2G02470 77.5 2.3e-63 239.2
Cme10g01083 . 8 155 Alfin-like Transcription Factor Family AT2G02470 67.5 1.3e-53 206.8
Cme04g02724 . 8 130 Alfin-like Transcription Factor Family AT2G02470 70.8 5.6e-49 191.4
Cme03g01394 . 1 167 Alfin-like Transcription Factor Family AT5G20510 78.0 6.4e-74 273.9
Cme01g02823 . 1 162 Alfin-like Transcription Factor Family AT5G20510 75.2 2.4e-68 255.4
Cme06g02215 . 3 172 Alfin-like Transcription Factor Family AT5G20510 71.5 7.6e-67 250.4
Cme10g01083 . 7 157 Alfin-like Transcription Factor Family AT5G20510 62.4 1.4e-52 203.0
Cme04g02724 . 7 152 Alfin-like Transcription Factor Family AT5G20510 59.9 7.9e-48 187.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000240 6 20 6 5 4 4 8 4 4 3 3 4 4 3 3 7 4 8 7 3 3 4 4 4 5 2 5 11 7 4 159
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41035 PF12165 Alfin 2.10E-69 No_clan Cme TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme03g01394 Cme_Chr03 FPKM 13.359873 13.797868 14.130037 13.370978 77.457985 81.04213 71.249985 16.844027 17.559727 15.178995