Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01406 ATGGAGGAAATGTCCCCAGCGGTTGTGGTGCCATTTAGGGTAGGTAATTCAGTCTGTGATAACCCCAACATGGCAACTCCCATGGATATCACAAGACTTAAGCTAATGGCAGATACTGCTGGTTTGTTATCTGATTCTGTGACTAAGGCTTCTGATGACCTGACTGAAGTAGGTTCTGATGATTGTAAGAGTTCTAATGGGGAGGAAGAGGTTGGTATTACTGCAGTTTCGGTTATGAATGACAAGTGCGAAGGAGTTCCATTGTCGGTTGTGTTATCTCAAAATAATAGCTATTGGGGTGCGGCAGACGAGACGATATCCCATGGAAGTGAGGAAGATGATTCTTTATCATTGGAGGGCGATCACATTTACGATAGCTCTTGTTCGCATTCAGTGATTAGTGAGACTAGCAGCATTTGTGGTGATGAATCTTTAGGTTCTGAGGCGTCCTCTTTTGATGCATTTGATTCTATCATTAATGCTAAGGACATTAGCAGCGTTGAGATTGCAGCTAAAGCCAATATTGAAGAGACTAATGTTGAAAGTCTCGAGACTCAGATTGCGAGTTCTTCTTCTGCAGCAGCTAGCCTTGAAGAAGATGTTGGAGGTGGGATAGGTACTGAAGCATGTAATAACATGGTTCTTCAGCTGCCTCTTGAGAAAAAGGCAAGCGAATCAGTTGGTCGAAGTGTTTTTGAGGTAGATTGTGTTCCTCTTTGGGGATATACATCGGTTTGTGGAAGAAGACCTGAGATGGAAGATGCAGTGGCAACCGTACCTAGGTTTTCAGAACTTCCTGTCCAAATGCTTGTTGGCGACCGAGTTCTTGATGGCTCAAACAAGGCTATAGCTCACCAAACCGTTCATTTTTTTGGGGTTTACGATGGTCATGGTGGTTCTCAGGTCGCAAATTTTTGTCGCGAACGTATGCACTTGGCTTTATCTGAGGAGATAGAACTTGCTAAGCACGATATAGCTGTTGGCAACATGAAGGATAATTGCCAAGAGCTATGGAGAAAGGCATTCACCAACTGTTTTCTAAAAGTTGATGCAGAAATTGGAGGAGCACCTGGTGTTGAGCCCGTTGCACCAGAAACTGTTGGCTCCACTGCTGTTGTTGCAATTATCTGTGCCTCTCACATTATTGTTGCGAACTGTGGAGATTCAAGAGCAGTTCTTTGTCGTGGGAAGGAGCCAATGGCATTGTCTGTGGATCATAAACCAAATAGAGCAGATGAATATGAAAGGATTGAGGCTGCTGGAGGAAAGGTCATACAGTGGAACGGGCACCGTGTTTTTGGTGTTCTTGCAATGTCGAGATCCATTGGTGATAGATACTTGAAACCATGGATTATCCCAGAGCCAGAAGTAATGTTCGTCCCTCGAGCAAAAGACGACGAATGCCTCGTTCTAGCCAGTGATGGTTTATGGGACGTGATGACGAATGAAGAGGTATGCGACCTGGCTCGAAGACGAATCCTACTCTGGCACAAGAAGAATGGTGTCAGTTTACCTTCTGAGAGGGGGTTGGGGATCGATCCCGCAGCCCAAGCAGCCGCAGAATACCTCTCAAACCGAGCTCTTCAAAAGGGCAGCAAAGACAACATCACGGTAATCGTGATCGATTTGAAAGCTCAAAGGAAGTTCAAGACAAAATCATAA 1662 44.95 MEEMSPAVVVPFRVGNSVCDNPNMATPMDITRLKLMADTAGLLSDSVTKASDDLTEVGSDDCKSSNGEEEVGITAVSVMNDKCEGVPLSVVLSQNNSYWGAADETISHGSEEDDSLSLEGDHIYDSSCSHSVISETSSICGDESLGSEASSFDAFDSIINAKDISSVEIAAKANIEETNVESLETQIASSSSAAASLEEDVGGGIGTEACNNMVLQLPLEKKASESVGRSVFEVDCVPLWGYTSVCGRRPEMEDAVATVPRFSELPVQMLVGDRVLDGSNKAIAHQTVHFFGVYDGHGGSQVANFCRERMHLALSEEIELAKHDIAVGNMKDNCQELWRKAFTNCFLKVDAEIGGAPGVEPVAPETVGSTAVVAIICASHIIVANCGDSRAVLCRGKEPMALSVDHKPNRADEYERIEAAGGKVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPEPEVMFVPRAKDDECLVLASDGLWDVMTNEEVCDLARRRILLWHKKNGVSLPSERGLGIDPAAQAAAEYLSNRALQKGSKDNITVIVIDLKAQRKFKTKS 553
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 23508330 23513634 - MELO3C011469.2.1 Cme03g01406 323417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01406 553 PANTHER ALPHABET, ISOFORM E-RELATED 120 552 - -
Cme03g01406 553 CDD PP2Cc 241 543 IPR001932 -
Cme03g01406 553 PANTHER PROTEIN PHOSPHATASE 2C 6-RELATED 120 552 - -
Cme03g01406 553 Coils Coil 180 200 - -
Cme03g01406 553 ProSiteProfiles PPM-type phosphatase domain profile. 239 543 IPR001932 -
Cme03g01406 553 SMART PP2C_4 229 541 IPR001932 -
Cme03g01406 553 Gene3D - 226 553 IPR036457 -
Cme03g01406 553 ProSitePatterns PPM-type phosphatase domain signature. 290 298 IPR000222 GO:0043169
Cme03g01406 553 Pfam Protein phosphatase 2C 267 536 IPR001932 -
Cme03g01406 553 SUPERFAMILY PP2C-like 236 544 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g00179 Cme-Chr2:1396259 Cme03g01406 Cme-Chr3:23508330 1.20E-88 dispersed
Cme03g01406 Cme-Chr3:23508330 Cme04g01231 Cme-Chr4:17057698 0 dispersed
Cme03g01406 Cme-Chr3:23508330 Cme12g00139 Cme-Chr12:1356184 3.19E-75 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01406 K14497 - csv:101207918 1076.23