Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01407 ATGAAAAGATTGAAGTTGGAATTAAAGCAAACCATGGATATGTATAGCTCAGCCTGCAAAGAGGCAATCTCAGCCAAGAACAAGGCAAGAGAACTAAGTCAGTGGAAGCAGGATGAGGCACGTAAGTTTGAGGAAGTCAGGCTAGCCGAAGAGGCTGCTCTTGCTATTGCCGAGATGGAGAAAGCCAAGTGCAAAGCTGCCATTGAAGCAGCAGAGGCAGCACAAAAGCTAGCCGAAAGAGAAGCCCAGAGAAGAAAACAGGCAGAAATGAAGGCCAGACGAGAGGCAGAAGAGAAAAAACGAGCATTGAATGCTCTAGCTCAGAACGACGTCCGATATAGAAAATACACTATAGAGGAGATTGAGGAATCTACTGAAAAGTTCTCTGAAAAATTGAAGATAGGAGAAGGTGGATACGGTCCCGTTTATGGTGGCAAACTTGATCATACGGCTGTTGCGATTAAAGTTTTAAGACCTGACGCTGCTCAAGGACGGAAGCAATTCCAACAAGAGGTGGAGGTTCTCTGTTGTATTAGACATCCAAACATGGTACTTCTTCTTGGAGCATGCCCTGAGTATGGTTGCTTGGTATATGAGTACATGCATAATGGAAGCTTAGAAGACAGACTTTTCCGGAGAGGGAATAGCCCTCCGTTATCCTGGAGACGACGATTCAAAATAGCTGCTGAAATTGCAACCGCACTCCTCTTTCTTCACCAAGCAAAGCCAGAGCCGCTTGTGCACAGAGACCTTAAACCAGCTAACATTCTCCTGGACCGCAATTTTGTGAGCAAAATTAGTGATGTTGGCCTGGCCCGGTTAGTCCCACCTTCTGTAGCTGATCAAGTCACACAGTATCATCTGACTTCAGCAGCTGGCACATTTTGTTACATTGATCCTGAGTACCAACAAACAGGGAAGTTGACGACAAAATCAGATATTTACTCGTTTGGAATAATGTTGCTTCAAATTATTACTGCCAAGCCTCCAATGGGTCTGGCTCACCATGTGCAAAGGGCTATTGAGAAAGATAGGTTTGATGAGATGCTTGATCCTACAATTTCAGATTGTCCATTGGAGGAGGCCACAAATTTTGCAAAGTTGGCATTGAAGTGCGCTGAATTGAGGAAGAGAGACAGGCCTGATCTTGGAACGGTTATAGTTCCAGAGCTCAATAGGTTAAGAGATATTGGGAGGAGTTCTGACAAACGTGAAAGCCGGAATCACTATTCACGCTCTTCTGCATCTGCATCAAGTTCCAGTTCGAAGCCGCAGTCATCAAATGAGGTCCACAACTTCAAGTGA 1305 44.98 MKRLKLELKQTMDMYSSACKEAISAKNKARELSQWKQDEARKFEEVRLAEEAALAIAEMEKAKCKAAIEAAEAAQKLAEREAQRRKQAEMKARREAEEKKRALNALAQNDVRYRKYTIEEIEESTEKFSEKLKIGEGGYGPVYGGKLDHTAVAIKVLRPDAAQGRKQFQQEVEVLCCIRHPNMVLLLGACPEYGCLVYEYMHNGSLEDRLFRRGNSPPLSWRRRFKIAAEIATALLFLHQAKPEPLVHRDLKPANILLDRNFVSKISDVGLARLVPPSVADQVTQYHLTSAAGTFCYIDPEYQQTGKLTTKSDIYSFGIMLLQIITAKPPMGLAHHVQRAIEKDRFDEMLDPTISDCPLEEATNFAKLALKCAELRKRDRPDLGTVIVPELNRLRDIGRSSDKRESRNHYSRSSASASSSSSKPQSSNEVHNFK 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 23519130 23523046 + MELO3C011467.2.1 Cme03g01407 323418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01407 434 SUPERFAMILY Protein kinase-like (PK-like) 111 386 IPR011009 -
Cme03g01407 434 MobiDBLite consensus disorder prediction 411 434 - -
Cme03g01407 434 Pfam Protein tyrosine and serine/threonine kinase 132 386 IPR001245 GO:0004672|GO:0006468
Cme03g01407 434 ProSiteProfiles Protein kinase domain profile. 128 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme03g01407 434 MobiDBLite consensus disorder prediction 396 434 - -
Cme03g01407 434 PANTHER OS02G0152300 PROTEIN 1 426 - -
Cme03g01407 434 Gene3D Transferase(Phosphotransferase) domain 1 201 419 - -
Cme03g01407 434 Gene3D Phosphorylase Kinase; domain 1 94 200 - -
Cme03g01407 434 CDD STKc_IRAK 134 394 - -
Cme03g01407 434 Coils Coil 54 109 - -
Cme03g01407 434 PANTHER KINASE WITH ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE DOMAIN-CONTAINING PROTEIN 1 426 - -
Cme03g01407 434 MobiDBLite consensus disorder prediction 396 410 - -
Cme03g01407 434 ProSitePatterns Serine/Threonine protein kinases active-site signature. 246 258 IPR008271 GO:0004672|GO:0006468
Cme03g01407 434 SMART serkin_6 128 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02830 Cme-Chr1:35244926 Cme03g01407 Cme-Chr3:23519130 7.72E-179 dispersed
Cme03g01407 Cme-Chr3:23519130 Cme05g01224 Cme-Chr5:19805120 0 dispersed
Cme03g01407 Cme-Chr3:23519130 Cme04g00320 Cme-Chr4:2501637 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64753 PF07714 PK_Tyr_Ser-Thr 2.50E-42 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01407 - - cmo:103488505 728.783