Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01414 ATGGAGGAAGAGGAATCCGGCGAGGCTATCCGGCCAGAATTTCCAACGGGCCGAGTGAAGAAGATAATGAAGCTCGACAAGGACATTGGCAAAGTGAATTCAGAAGCCTTGTTTCTAGTCTCATGCGCCACAGAACTCTTCCTTAAGCTTCTAGCTGAAAAATCTGCAGAAGTCGCCGCTGAGAAGAAACGGAAGACCGTGAAGCTTGAACACATCCGAATGGCCGTCAAAAGGCATCGCTCGATCAGTGATTTTCTTCTCGATTCACTTCCTCTTCCGTCTCAGCCGTCGGATGCGTCGGCGAAGGACGAGAATCGCATTCGCGCTGTCGTTGACAAAGTGGCTCCTGCAGGAACGCGTCGAATCGATGATTTCTTTCGTCGGCCAACTAAGACAACGTCGGCGGAGACCAACGAGTCATAG 423 51.3 MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDASAKDENRIRAVVDKVAPAGTRRIDDFFRRPTKTTSAETNES 140
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 23564378 23565287 + MELO3C011458.2.1 Cme03g01414 323425

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01414 140 SUPERFAMILY Histone-fold 12 91 IPR009072 GO:0046982
Cme03g01414 140 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 13 76 IPR003958 -
Cme03g01414 140 PANTHER NUCLEAR FACTOR Y, SUBUNIT C13 2 130 - -
Cme03g01414 140 Gene3D Histone, subunit A 1 91 IPR009072 GO:0046982
Cme03g01414 140 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 2 130 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01414 - - - cmo:103488501 236.498
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01414 Cme-Chr3:23564378 Cme10g00737 Cme-Chr10:4691158 8.17E-12 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme02g02068 . 97 281 CCAAT-HAP5 Transcription Factor Family AT3G48590 89.0 4.3e-88 321.2
Cme02g00106 . 81 248 CCAAT-HAP5 Transcription Factor Family AT3G48590 64.9 2.6e-53 205.7
Cme01g00287 . 82 225 CCAAT-HAP5 Transcription Factor Family AT3G48590 68.8 7.7e-53 204.1
Cme02g00106 . 1 258 CCAAT-HAP5 Transcription Factor Family AT1G08970 56.0 5.1e-57 218.0
Cme01g00287 . 22 180 CCAAT-HAP5 Transcription Factor Family AT1G08970 68.8 6.6e-49 191.0
Cme02g02068 . 96 195 CCAAT-HAP5 Transcription Factor Family AT1G08970 83.0 7.1e-43 171.0
Cme02g00106 . 22 248 CCAAT-HAP5 Transcription Factor Family AT1G54830 60.5 5.4e-61 231.1
Cme01g00287 . 28 224 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.1 2.1e-52 202.6
Cme02g02068 . 96 255 CCAAT-HAP5 Transcription Factor Family AT1G54830 67.3 1.8e-51 199.5
Cme02g02068 . 96 254 CCAAT-HAP5 Transcription Factor Family AT5G50480 54.7 3.5e-38 155.2
Cme02g02068 . 97 281 CCAAT-HAP5 Transcription Factor Family AT5G63470 80.9 3.5e-80 295.0
Cme02g00106 . 81 249 CCAAT-HAP5 Transcription Factor Family AT5G63470 61.8 6.5e-50 194.5
Cme01g00287 . 82 233 CCAAT-HAP5 Transcription Factor Family AT5G63470 63.9 1.9e-49 193.0
Cme01g00287 . 46 213 CCAAT-HAP5 Transcription Factor Family AT1G56170 81.1 2.2e-64 242.3
Cme02g02068 . 97 220 CCAAT-HAP5 Transcription Factor Family AT1G56170 74.8 4.0e-50 194.9
Cme02g00106 . 53 212 CCAAT-HAP5 Transcription Factor Family AT1G56170 69.1 6.8e-50 194.1
Cme03g01414 . 1 135 CCAAT-HAP5 Transcription Factor Family AT5G43250 64.0 5.1e-38 154.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009175 3 1 1 1 0 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 0 1 1 1 1 0 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41037 PF00808 CBFD_NFYB_HMF 2.30E-20 CL0012 Cme TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme03g01414 Cme_Chr03 FPKM 2.316693 1.870246 0.43819 0.925798 5.956995 5.384844 4.409902 4.033762 2.385486 3.14712