Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01425 ATGGACGACGGAGGAGCTTCTCAGCCGGACGACACCGTCATGTCGGAGGCGGCGTCTGTACCTCCACCGCAGCATGACCCGGCGGCGCAACAGCAACATCAACATCAGCCGCCGTCGATGGGGATGGAAAATATTCCGGCGACTTTGAGCCATGGAGGGAGATTTATTCAGTATAATATATTTGGTAACATCTTTGAAGTTACGGCCAAGTACAAGCCTCCTATTATGCCTATTGGCAAAGGCGCTTACGGCATCGTCTGTTCTGCTCTCAACTCTGAGACGAACGAGCATGTGGCGATTAAGAAGATTGCTAATGCGTTTGATAACAAGATCGATGCCAAGAGAACTCTTCGTGAGATCAAGCTTCTTCGGCATATGGATCATGAAAACGTTGTTGCGATCAGGGATATCATACCTCCGCCTCTAAGGGAAACATTTAATGATGTTTATATCGCATATGAGCTAATGGATACCGACCTTCATCAAATAATTCGTTCAAACCAAGCATTATCAGAGGAGCATTGTCAGTATTTCCTGTACCAGATACTTCGTGGATTGAAGTACATACATTCGGCTAATGTTCTGCACAGAGATTTGAAACCTTCCAATCTGCTATTAAATGCAAACTGTGACCTGAAAATATGCGATTTCGGACTTGCTCGTGTTACTTCTGAAACTGACTTCATGACAGAATATGTGGTTACTAGATGGTACCGTGCACCAGAGCTCTTACTTAATTCATCTGATTACACCGCAGCTATTGATGTCTGGTCTGTTGGTTGTATTTTTATGGAACTAATGGATCGGAAGCCCTTGTTTCCTGGTCGTGATCATGTGCATCAGTTACGCTTGCTTTTGGAGCTGATTGGCACTCCATCAGAGGCTGATCTTGGTTTTTTGAACGAGAATGCTAAAAGATACATACGGCAATTACCTTATTACCACCGTCAATCATTCACCGAAAAGTTTCCACATGTCCATCCTGCAGCCATTGATCTGGTGGAGAAGATGCTAACATTTGATCCAGGACAGAGAATTACCGTTGAAGACGCTCTAGCTCATCCCTATTTGACTTCATTACACGACATTAGTGATGAGCCTGTCTGCATGACACCCTTCAGCTTTGATTTCGAGCAGCATGCACTTACTGAGGAACAGATGAAAGAGCTGATCTATCTAGAGGCGCTTGCATTTAACCCCGAGTATCATCACCAATAA 1218 44.5 MDDGGASQPDDTVMSEAASVPPPQHDPAAQQQHQHQPPSMGMENIPATLSHGGRFIQYNIFGNIFEVTAKYKPPIMPIGKGAYGIVCSALNSETNEHVAIKKIANAFDNKIDAKRTLREIKLLRHMDHENVVAIRDIIPPPLRETFNDVYIAYELMDTDLHQIIRSNQALSEEHCQYFLYQILRGLKYIHSANVLHRDLKPSNLLLNANCDLKICDFGLARVTSETDFMTEYVVTRWYRAPELLLNSSDYTAAIDVWSVGCIFMELMDRKPLFPGRDHVHQLRLLLELIGTPSEADLGFLNENAKRYIRQLPYYHRQSFTEKFPHVHPAAIDLVEKMLTFDPGQRITVEDALAHPYLTSLHDISDEPVCMTPFSFDFEQHALTEEQMKELIYLEALAFNPEYHHQ 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 23635980 23647707 + MELO3C011444.2.1 Cme03g01425 323436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01425 405 ProSitePatterns Protein kinases ATP-binding region signature. 78 102 IPR017441 GO:0005524
Cme03g01425 405 CDD STKc_TEY_MAPK 65 400 - -
Cme03g01425 405 ProSiteProfiles Protein kinase domain profile. 72 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme03g01425 405 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 34 403 - -
Cme03g01425 405 MobiDBLite consensus disorder prediction 25 43 - -
Cme03g01425 405 Pfam Protein kinase domain 77 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme03g01425 405 SMART serkin_6 72 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme03g01425 405 MobiDBLite consensus disorder prediction 1 46 - -
Cme03g01425 405 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Cme03g01425 405 SUPERFAMILY Protein kinase-like (PK-like) 77 365 IPR011009 -
Cme03g01425 405 Gene3D Phosphorylase Kinase; domain 1 55 393 - -
Cme03g01425 405 ProSitePatterns MAP kinase signature. 107 210 IPR003527 GO:0004707|GO:0005524|GO:0006468
Cme03g01425 405 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 34 403 - -
Cme03g01425 405 Gene3D Transferase(Phosphotransferase) domain 1 156 384 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01425 Cme-Chr3:23635980 Cme12g00271 Cme-Chr12:3136210 0 dispersed
Cme11g02550 Cme-Chr11:31900268 Cme03g01425 Cme-Chr3:23635980 7.33E-54 dispersed
Cme12g01839 Cme-Chr12:24749678 Cme03g01425 Cme-Chr3:23635980 1.52E-111 dispersed
Cme03g01425 Cme-Chr3:23635980 Cme09g01791 Cme-Chr9:22327506 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64754 PF00069 Pkinase 3.50E-73 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01425 K14512 - csv:101204301 801.586