Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01437 ATGGCCGATTCTCCTCCTCCTCCTCCTCCTCCTCCTTTCTCCACCGCCGATTCCTCCTCTACTTCCTCCAACGCTCTTTTCTTCTTCCCTCCCGATTCCGATTCCACCATCCTCACCCAATTCGGTTGGAATTTCCACTCTCTTCAACCTCAACCTTCTCGATTCCATGACTCTCACCCGATCCACTCCGATTTCCCTGCAACCTCCACTACTACTACTACTACTACTACTACTACTACTACTATTACTACTACTCCTCCACTCATCGAAGACTCCGCTGGATTATCAGACGCTCCTCTTCCTCTCCCTTCTAATCCTTCTCTCTCTTCCAGCTCCAGCGGTGATCCCCCGGACAAACCGCCTGAGATCATTACTCCGCGGAAGGTGAAAAAGAAGGGGCAAAAGCGAATTCGGCAGCCAAGATTTGCGTTCATGACCAAAAGTGAAGTTGATCATCTTGAAGATGGTTACCGGTGGAGGAAATATGGACAAAAGGCTGTCAAAAACAGTCCTTTCCCTAGGAGCTACTACAGGTGCACAAACAGCAAATGCACAGTAAAAAAAAGGGTAGAACGGTCGTGTGAAGATCCAAGCGTTGTAATAACAACATATGAAGGCCAACATTGCCATCACACCGTTGGATTCCCTCGAGGTGGATTAACCATAGCTCATGAAACTTCTTTTGGTTCTCAATTTTCACCTCAAATCCCACATTTTTTTTACCCTGATCCATCACCACCACCACCTCCACCCCCAACAACAACTAATAACCATAACCCTCCCACACCTCCCATTGACCAACATTTCCCCAGTACTTCTAGTTCGACTGAACAACAAGAACCACCAAATTCACATCTCCAACAACTTCCTTCCAACGAAGGCTTGCTCGGTGCTATCGTCCCCCCTGCCATGATGCGTAGAACAACATGA 930 47.74 MADSPPPPPPPPFSTADSSSTSSNALFFFPPDSDSTILTQFGWNFHSLQPQPSRFHDSHPIHSDFPATSTTTTTTTTTTTTITTTPPLIEDSAGLSDAPLPLPSNPSLSSSSSGDPPDKPPEIITPRKVKKKGQKRIRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSCEDPSVVITTYEGQHCHHTVGFPRGGLTIAHETSFGSQFSPQIPHFFYPDPSPPPPPPPTTTNNHNPPTPPIDQHFPSTSSSTEQQEPPNSHLQQLPSNEGLLGAIVPPAMMRRTT 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 23732372 23736509 - MELO3C011432.2.1 Cme03g01437 323448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01437 309 MobiDBLite consensus disorder prediction 268 291 - -
Cme03g01437 309 MobiDBLite consensus disorder prediction 1 15 - -
Cme03g01437 309 SUPERFAMILY WRKY DNA-binding domain 145 211 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cme03g01437 309 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 22 224 IPR044810 GO:0003700
Cme03g01437 309 MobiDBLite consensus disorder prediction 53 139 - -
Cme03g01437 309 SMART WRKY_cls 153 212 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme03g01437 309 Pfam WRKY DNA -binding domain 154 210 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme03g01437 309 MobiDBLite consensus disorder prediction 233 309 - -
Cme03g01437 309 MobiDBLite consensus disorder prediction 239 267 - -
Cme03g01437 309 PANTHER WRKY TRANSCRIPTION FACTOR 57-RELATED 22 224 - -
Cme03g01437 309 MobiDBLite consensus disorder prediction 102 116 - -
Cme03g01437 309 Gene3D WRKY domain 140 206 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cme03g01437 309 MobiDBLite consensus disorder prediction 63 90 - -
Cme03g01437 309 ProSiteProfiles WRKY domain profile. 148 213 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme03g01437 309 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01403 Cme-Chr3:23498091 Cme03g01437 Cme-Chr3:23732372 1.81E-11 dispersed
Cme03g01437 Cme-Chr3:23732372 Cme08g00164 Cme-Chr8:1148798 1.35E-43 dispersed
Cme08g02418 Cme-Chr8:31046358 Cme03g01437 Cme-Chr3:23732372 2.31E-23 dispersed
Cme03g01437 Cme-Chr3:23732372 Cme01g01544 Cme-Chr1:20552695 1.13E-46 transposed
Cme03g01437 Cme-Chr3:23732372 Cme11g02090 Cme-Chr11:28560931 3.52E-46 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41038 PF03106 WRKY 1.40E-24 CL0274 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01437 - - cmo:103488478 517.309