Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01448 ATGTCTTCCGCCGAGAAGGAAAGAGAGACCCAGGTTTACATGGCCAAACTCGCCGAGCAGGCCGAACGCTATGACGGTTTTGGTATTCCTTTTCGTGTTGAATTTGTAGTCGAAATGCTGATTGGTGTTGAAATGGTCGAGTGTATGAAGAATATTGCAAAACTTGACCTCGAACTAACTGTAGAGGAGAGGAACCTTCTTTCTGTGGGGTACAAAAATGTCATAGGTGCACGACGAGCCTCTTGGCGCATCATGTCTTCAATTGAGCAGAAAGAGGAGTCTAAGGGGAATGAGAACATTGTAAAATTGATAAAGAGTTACCGCCAAAAAGTGGAGGAGGAGCTTACAAAGATTTGCGGTGATATTCTCTCTATCATTGACAAGCATCTAATCCCTCATTCGTCCTCTGCAGAAGCCACTGTTTTCTACTACAAGATTTACTGCCATGGCATCCATGATTTCAGGAAAGGTGACTACTATCGTTATCTTGCTGAGTTCAAGACAGATCAAGATAGAAAAGAGGCTGCTGATCAGTCGTTGAAGGGATATGAGGCATTTATTTTCTTTATAACATTCAAGTTTCACATCATTAAATATAAAAGAACAATAGCCTCCTTTGCAATTGCTGCATCAGGTACTGCTAATAACGAACTCCCATCAACCCACCCAATCCGTCTTGGCCTTGCCCTCAACTTTTCTGTCTTCTACTATGAGATTATGAACTCTCCTGAGAGAGCTTGCCATTTGGCTAAACAAGCTTTTGATGAGGCAATCGCGGAGTTGGATACCTTGAGTGAGGAATCATACAAGGACAGCACTCTGATCATGCAGCTGTTGAGAGATAACCTCACCCTCTGGACCTCAGATTTGCCTGAAGATGGCGGTGACGAAAACTTCAAAGCTGAGGAATCCAAACCTGCTGAACCCGAGGCCCAGCAAGCGAAATGA 948 43.88 MSSAEKERETQVYMAKLAEQAERYDGFGIPFRVEFVVEMLIGVEMVECMKNIAKLDLELTVEERNLLSVGYKNVIGARRASWRIMSSIEQKEESKGNENIVKLIKSYRQKVEEELTKICGDILSIIDKHLIPHSSSAEATVFYYKIYCHGIHDFRKGDYYRYLAEFKTDQDRKEAADQSLKGYEAFIFFITFKFHIIKYKRTIASFAIAASGTANNELPSTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDLPEDGGDENFKAEESKPAEPEAQQAK 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 23809227 23812902 - MELO3C011421.2.1 Cme03g01448 323459

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01448 315 PANTHER BNAC03G57490D PROTEIN 209 310 - -
Cme03g01448 315 ProSitePatterns 14-3-3 proteins signature 2. 269 288 IPR023409 -
Cme03g01448 315 PRINTS 14-3-3 protein zeta signature 58 87 IPR000308 -
Cme03g01448 315 PRINTS 14-3-3 protein zeta signature 107 131 IPR000308 -
Cme03g01448 315 MobiDBLite consensus disorder prediction 289 315 - -
Cme03g01448 315 Gene3D - 1 300 IPR036815 -
Cme03g01448 315 MobiDBLite consensus disorder prediction 293 309 - -
Cme03g01448 315 Coils Coil 247 267 - -
Cme03g01448 315 SUPERFAMILY 14-3-3 protein 7 289 IPR036815 -
Cme03g01448 315 ProSitePatterns 14-3-3 proteins signature 1. 64 74 IPR023409 -
Cme03g01448 315 Pfam 14-3-3 protein 210 287 IPR023410 -
Cme03g01448 315 Pfam 14-3-3 protein 44 184 IPR023410 -
Cme03g01448 315 PANTHER 14-3-3 PROTEIN 209 310 IPR000308 -
Cme03g01448 315 SMART 1433_4 8 300 IPR023410 -
Cme03g01448 315 PANTHER 14-3-3 PROTEIN 4 185 IPR000308 -
Cme03g01448 315 PANTHER BNAC03G57490D PROTEIN 4 185 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01448 - - K06630 csv:101221858 477.248
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01448 Cme-Chr3:23809227 Cme10g00363 Cme-Chr10:2337132 4.51E-164 dispersed
Cme03g01448 Cme-Chr3:23809227 Cme03g01863 Cme-Chr3:26886991 2.22E-124 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme03g01852 CCT 4 242 14-3-3 family AT4G09000 90.8 6.4e-119 424.1
Cme04g00274 CCT 5 242 14-3-3 family AT4G09000 90.3 7.1e-118 420.6
Cme07g01081 . 4 241 14-3-3 family AT4G09000 87.0 2.4e-113 405.6
Cme04g00247 . 11 246 14-3-3 family AT4G09000 76.7 2.3e-100 362.5
Cme01g00322 . 7 238 14-3-3 family AT4G09000 73.1 4.6e-93 338.2
Cme10g00363 . 4 239 14-3-3 family AT4G09000 72.3 3.3e-91 332.0
Cme04g00285 CCT,ECH 71 307 14-3-3 family AT4G09000 70.3 9.3e-86 313.9
Cme03g01863 CCT,ECH 5 240 14-3-3 family AT4G09000 67.6 4.6e-85 311.6
Cme03g01448 . 4 290 14-3-3 family AT4G09000 58.5 2.6e-80 295.8
Cme03g01852 CCT 6 261 14-3-3 family AT1G78300 89.8 1.4e-124 442.6
Cme04g00274 CCT 5 258 14-3-3 family AT1G78300 90.6 9.2e-124 439.9
Cme07g01081 . 6 253 14-3-3 family AT1G78300 87.1 3.7e-117 417.9
Cme04g00247 . 11 247 14-3-3 family AT1G78300 77.2 3.8e-101 364.8
Cme01g00322 . 7 247 14-3-3 family AT1G78300 71.2 1.3e-93 339.7
Cme10g00363 . 8 260 14-3-3 family AT1G78300 70.2 2.4e-92 335.5
Cme03g01863 CCT,ECH 1 243 14-3-3 family AT1G78300 67.3 4.5e-86 314.7
Cme04g00285 CCT,ECH 67 314 14-3-3 family AT1G78300 66.4 9.9e-86 313.5
Cme03g01448 . 8 308 14-3-3 family AT1G78300 58.1 3.0e-82 302.0
Cme07g01081 . 6 259 14-3-3 family AT5G38480 90.2 1.5e-123 439.1
Cme03g01852 CCT 6 252 14-3-3 family AT5G38480 85.8 1.0e-114 409.8
Cme04g00274 CCT 6 252 14-3-3 family AT5G38480 85.4 5.0e-114 407.5
Cme04g00247 . 10 251 14-3-3 family AT5G38480 73.1 5.5e-97 350.9
Cme10g00363 . 8 255 14-3-3 family AT5G38480 73.2 9.7e-94 340.1
Cme01g00322 . 7 247 14-3-3 family AT5G38480 72.4 3.7e-93 338.2
Cme03g01863 CCT,ECH 5 245 14-3-3 family AT5G38480 70.4 1.4e-87 319.7
Cme04g00285 CCT,ECH 71 319 14-3-3 family AT5G38480 68.5 9.7e-86 313.5
Cme03g01448 . 8 306 14-3-3 family AT5G38480 59.1 5.0e-82 301.2
Cme03g01852 CCT 3 242 14-3-3 family AT1G35160 90.0 1.3e-118 422.9
Cme04g00274 CCT 4 242 14-3-3 family AT1G35160 89.5 1.5e-117 419.5
Cme07g01081 . 3 240 14-3-3 family AT1G35160 86.6 2.4e-112 402.1
Cme04g00247 . 11 246 14-3-3 family AT1G35160 77.1 1.6e-100 362.8
Cme01g00322 . 2 237 14-3-3 family AT1G35160 71.0 8.1e-92 334.0
Cme10g00363 . 8 239 14-3-3 family AT1G35160 73.1 4.0e-91 331.6
Cme04g00285 CCT,ECH 66 307 14-3-3 family AT1G35160 69.3 8.7e-86 313.9
Cme03g01863 CCT,ECH 5 240 14-3-3 family AT1G35160 67.2 4.3e-85 311.6
Cme03g01448 . 8 290 14-3-3 family AT1G35160 58.9 7.1e-80 294.3
Cme07g01081 . 4 254 14-3-3 family AT5G16050 86.5 7.8e-118 420.2
Cme03g01852 CCT 3 253 14-3-3 family AT5G16050 79.3 1.1e-108 389.8
Cme04g00274 CCT 4 251 14-3-3 family AT5G16050 79.5 1.2e-105 379.8
Cme04g00247 . 10 248 14-3-3 family AT5G16050 70.7 1.9e-92 335.9
Cme10g00363 . 3 246 14-3-3 family AT5G16050 65.4 6.7e-85 310.8
Cme01g00322 . 1 246 14-3-3 family AT5G16050 65.1 2.5e-84 308.9
Cme03g01863 CCT,ECH 2 243 14-3-3 family AT5G16050 63.5 1.2e-78 290.0
Cme04g00285 CCT,ECH 71 313 14-3-3 family AT5G16050 64.5 1.6e-78 289.7
Cme03g01448 . 3 297 14-3-3 family AT5G16050 55.3 3.3e-76 282.0
Cme04g00247 . 9 246 14-3-3 family AT5G10450 84.9 7.2e-111 397.1
Cme03g01852 CCT 3 251 14-3-3 family AT5G10450 76.8 1.7e-104 375.9
Cme04g00274 CCT 1 242 14-3-3 family AT5G10450 79.4 2.9e-104 375.2
Cme07g01081 . 4 259 14-3-3 family AT5G10450 73.9 1.1e-103 373.2
Cme01g00322 . 1 238 14-3-3 family AT5G10450 68.0 3.8e-88 321.6
Cme10g00363 . 3 239 14-3-3 family AT5G10450 66.3 1.5e-84 309.7
Cme04g00285 CCT,ECH 66 307 14-3-3 family AT5G10450 65.3 1.2e-81 300.1
Cme03g01863 CCT,ECH 5 240 14-3-3 family AT5G10450 64.9 3.5e-81 298.5
Cme03g01448 . 3 290 14-3-3 family AT5G10450 53.5 7.0e-74 274.2
Cme07g01081 . 6 260 14-3-3 family AT3G02520 93.0 1.3e-128 456.1
Cme03g01852 CCT 6 252 14-3-3 family AT3G02520 87.1 7.7e-118 420.2
Cme04g00274 CCT 5 258 14-3-3 family AT3G02520 84.8 1.1e-116 416.4
Cme04g00247 . 10 248 14-3-3 family AT3G02520 75.3 7.2e-100 360.5
Cme10g00363 . 8 256 14-3-3 family AT3G02520 69.3 2.9e-93 338.6
Cme01g00322 . 1 241 14-3-3 family AT3G02520 70.4 6.2e-91 330.9
Cme03g01863 CCT,ECH 1 243 14-3-3 family AT3G02520 68.6 3.2e-87 318.5
Cme04g00285 CCT,ECH 67 312 14-3-3 family AT3G02520 69.0 7.0e-87 317.4
Cme03g01448 . 8 308 14-3-3 family AT3G02520 57.3 1.8e-82 302.8
Cme04g00247 . 9 246 14-3-3 family AT5G65430 85.3 1.6e-112 402.5
Cme04g00274 CCT 1 242 14-3-3 family AT5G65430 80.2 9.6e-105 376.7
Cme07g01081 . 7 241 14-3-3 family AT5G65430 79.7 4.8e-104 374.4
Cme03g01852 CCT 8 242 14-3-3 family AT5G65430 80.5 8.1e-104 373.6
Cme01g00322 . 1 238 14-3-3 family AT5G65430 69.3 3.3e-89 325.1
Cme10g00363 . 8 239 14-3-3 family AT5G65430 69.8 9.0e-87 317.0
Cme04g00285 CCT,ECH 66 307 14-3-3 family AT5G65430 66.9 4.6e-83 304.7
Cme03g01863 CCT,ECH 5 240 14-3-3 family AT5G65430 66.5 2.3e-82 302.4
Cme03g01448 . 8 290 14-3-3 family AT5G65430 55.5 2.3e-74 275.8
Cme01g00322 . 1 261 14-3-3 family AT2G42590 81.0 2.0e-116 415.6
Cme10g00363 . 6 257 14-3-3 family AT2G42590 75.5 5.1e-104 374.4
Cme04g00285 CCT,ECH 69 316 14-3-3 family AT2G42590 73.4 3.7e-99 358.2
Cme03g01863 CCT,ECH 3 244 14-3-3 family AT2G42590 75.2 3.2e-98 355.1
Cme03g01448 . 6 304 14-3-3 family AT2G42590 61.9 5.8e-92 334.3
Cme07g01081 . 8 248 14-3-3 family AT2G42590 73.0 9.9e-92 333.6
Cme03g01852 CCT 8 248 14-3-3 family AT2G42590 70.5 3.8e-91 331.6
Cme04g00274 CCT 8 245 14-3-3 family AT2G42590 71.0 1.2e-89 326.6
Cme04g00247 . 11 248 14-3-3 family AT2G42590 64.7 7.1e-82 300.8
Cme01g00322 . 6 242 14-3-3 family AT1G22300 77.6 2.5e-102 368.6
Cme10g00363 . 5 244 14-3-3 family AT1G22300 77.5 3.3e-102 368.2
Cme03g01863 CCT,ECH 1 248 14-3-3 family AT1G22300 75.4 6.4e-98 354.0
Cme04g00285 CCT,ECH 67 312 14-3-3 family AT1G22300 74.8 3.2e-97 351.7
Cme03g01448 . 5 295 14-3-3 family AT1G22300 63.9 4.0e-92 334.7
Cme07g01081 . 5 246 14-3-3 family AT1G22300 70.7 3.4e-91 331.6
Cme03g01852 CCT 8 246 14-3-3 family AT1G22300 70.3 9.3e-89 323.6
Cme04g00274 CCT 8 245 14-3-3 family AT1G22300 69.3 2.3e-87 318.9
Cme04g00247 . 11 248 14-3-3 family AT1G22300 65.1 1.3e-79 293.1
Cme10g00363 . 5 245 14-3-3 family AT1G34760 81.3 7.1e-105 377.1
Cme01g00322 . 6 246 14-3-3 family AT1G34760 79.7 3.0e-103 371.7
Cme03g01863 CCT,ECH 1 245 14-3-3 family AT1G34760 76.7 6.5e-98 354.0
Cme04g00285 CCT,ECH 67 315 14-3-3 family AT1G34760 75.9 7.1e-97 350.5
Cme03g01448 . 5 298 14-3-3 family AT1G34760 64.6 8.2e-93 337.0
Cme07g01081 . 5 250 14-3-3 family AT1G34760 71.1 1.1e-89 326.6
Cme03g01852 CCT 8 245 14-3-3 family AT1G34760 72.3 5.5e-89 324.3
Cme04g00274 CCT 8 249 14-3-3 family AT1G34760 69.4 1.0e-87 320.1
Cme04g00247 . 11 247 14-3-3 family AT1G34760 63.7 8.8e-79 290.4
Cme10g00363 . 2 254 14-3-3 family AT1G26480 86.6 2.7e-118 421.8
Cme03g01448 . 2 305 14-3-3 family AT1G26480 70.7 6.2e-107 384.0
Cme01g00322 . 3 242 14-3-3 family AT1G26480 78.8 2.9e-104 375.2
Cme04g00285 CCT,ECH 69 313 14-3-3 family AT1G26480 75.5 1.2e-97 353.2
Cme03g01863 CCT,ECH 2 244 14-3-3 family AT1G26480 75.3 2.0e-97 352.4
Cme03g01852 CCT 8 260 14-3-3 family AT1G26480 72.0 5.1e-93 337.8
Cme04g00274 CCT 8 247 14-3-3 family AT1G26480 74.2 1.5e-92 336.3
Cme07g01081 . 2 256 14-3-3 family AT1G26480 71.6 9.6e-92 333.6
Cme04g00247 . 11 244 14-3-3 family AT1G26480 67.1 2.0e-81 299.3
Cme10g00363 . 5 237 14-3-3 family AT1G78220 52.6 1.6e-64 243.0
Cme01g00322 . 6 236 14-3-3 family AT1G78220 50.4 2.5e-62 235.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000281 3 7 3 4 1 5 6 5 5 3 5 5 6 5 5 5 5 6 6 5 5 5 5 4 4 5 4 9 8 4 148
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme03g01448 Cme_Chr03 FPKM 271.203705 292.752747 69.168289 68.850784 28.900492 27.302372 27.927563 42.389561 42.480347 42.214672