Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01456 ATGCCGAGCATTTCGGCCCTCTATTCCATTCAAGAAGTCTCACAGCACAGTTCCAGCGACGACTGTTGGATCATTATCGATGGCAAGGTATACGATTTGACTTCATATTTGGATGAGCATCCTGGTGGAGATGATATTATTGTGACTGCAACTGGCAGAGATGCCACAGATGATTTTGAAGATGCTGGTCATAGCAAAGATGCCAGGGAGTTGATGGAGAAGTTCTATATTGGCTTGCTTGATACATCTTCCTCGGATAGCTTAAAACTTGAAACGAATCAAGTAGACAGTTATGCAACTCGGGTTCAGACCTTGACAAAGCAATACTGGAAGGCCCCCGTTGCAGTAATTGGTATTTCTATGGTACTTGGTTGGGTATACTTGCGCAAAAAGTGA 396 43.69 MPSISALYSIQEVSQHSSSDDCWIIIDGKVYDLTSYLDEHPGGDDIIVTATGRDATDDFEDAGHSKDARELMEKFYIGLLDTSSSDSLKLETNQVDSYATRVQTLTKQYWKAPVAVIGISMVLGWVYLRKK 131
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 23847288 23849876 + MELO3C011415.2.1 Cme03g01456 323467

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01456 131 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 36 43 IPR018506 GO:0020037
Cme03g01456 131 PANTHER CYTOCHROME B5 3 130 - -
Cme03g01456 131 PANTHER CYTOCHROME B5 ISOFORM A 3 130 - -
Cme03g01456 131 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 5 84 IPR036400 -
Cme03g01456 131 Pfam Cytochrome b5-like Heme/Steroid binding domain 11 80 IPR001199 -
Cme03g01456 131 Gene3D - 5 94 IPR036400 -
Cme03g01456 131 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 5 81 IPR001199 -
Cme03g01456 131 SMART Cyt_b5_2 8 81 IPR001199 -
Cme03g01456 131 PRINTS Cytochrome B5 signature 30 40 IPR001199 -
Cme03g01456 131 PRINTS Cytochrome B5 signature 40 54 IPR001199 -
Cme03g01456 131 PRINTS Cytochrome B5 signature 55 62 IPR001199 -
Cme03g01456 131 PRINTS Cytochrome B5 signature 68 80 IPR001199 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01456 K23490 CYB5; cytochrome b5 - csv:101220127 251.906
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01456 Cme-Chr3:23847288 Cme06g00386 Cme-Chr6:2431054 4.16E-31 dispersed
Cme03g01456 Cme-Chr3:23847288 Cme05g00704 Cme-Chr5:8215431 1.09E-34 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme05g00704 . 1 134 NADPH P450 reductases AT5G53560 67.2 7.8e-50 193.4
Cme06g00386 . 1 143 NADPH P450 reductases AT5G53560 63.6 3.9e-49 191.0
Cme04g01532 . 4 131 NADPH P450 reductases AT5G53560 64.8 6.8e-46 180.3
Cme09g02007 . 2 112 NADPH P450 reductases AT5G53560 74.8 9.8e-45 176.4
Cme05g00704 . 1 134 NADPH P450 reductases AT5G48810 61.8 2.9e-47 184.9
Cme06g00386 . 1 142 NADPH P450 reductases AT5G48810 60.4 2.1e-45 178.7
Cme04g01532 . 2 132 NADPH P450 reductases AT5G48810 61.7 6.0e-45 177.2
Cme06g00386 . 26 143 NADPH P450 reductases AT2G32720 83.9 1.6e-50 195.7
Cme05g00704 . 13 133 NADPH P450 reductases AT2G32720 73.8 5.6e-48 187.2
Cme04g01532 . 21 132 NADPH P450 reductases AT2G32720 70.5 3.9e-41 164.5
Cme09g02007 . 7 111 NADPH P450 reductases AT2G32720 68.6 6.2e-39 157.1
Cme03g01456 . 1 130 NADPH P450 reductases AT1G26340 52.2 4.5e-37 151.0
Cme08g01481 CCT 2 281 NADPH P450 reductases AT5G17770 82.5 1.2e-132 469.5
Cme04g02153 CCT 2 280 NADPH P450 reductases AT5G17770 77.8 4.8e-126 447.6
Cme05g00031 . 34 287 NADPH P450 reductases AT5G17770 76.0 7.2e-114 407.1
Cme05g00704 . 1 134 NADPH P450 reductases AT5G53560 67.2 7.8e-50 193.4
Cme06g00386 . 1 143 NADPH P450 reductases AT5G53560 63.6 3.9e-49 191.0
Cme04g01532 . 4 131 NADPH P450 reductases AT5G53560 64.8 6.8e-46 180.3
Cme09g02007 . 2 112 NADPH P450 reductases AT5G53560 74.8 9.8e-45 176.4
Cme05g00704 . 1 134 NADPH P450 reductases AT5G48810 61.8 2.9e-47 184.9
Cme06g00386 . 1 142 NADPH P450 reductases AT5G48810 60.4 2.1e-45 178.7
Cme04g01532 . 2 132 NADPH P450 reductases AT5G48810 61.7 6.0e-45 177.2
Cme06g00386 . 26 143 NADPH P450 reductases AT2G32720 83.9 1.6e-50 195.7
Cme05g00704 . 13 133 NADPH P450 reductases AT2G32720 73.8 5.6e-48 187.2
Cme04g01532 . 21 132 NADPH P450 reductases AT2G32720 70.5 3.9e-41 164.5
Cme09g02007 . 7 111 NADPH P450 reductases AT2G32720 68.6 6.2e-39 157.1
Cme03g01456 . 1 130 NADPH P450 reductases AT1G26340 52.2 4.5e-37 151.0
Cme08g01481 CCT 2 281 NADPH P450 reductases AT5G17770 82.5 1.2e-132 469.5
Cme04g02153 CCT 2 280 NADPH P450 reductases AT5G17770 77.8 4.8e-126 447.6
Cme05g00031 . 34 287 NADPH P450 reductases AT5G17770 76.0 7.2e-114 407.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013997 0 1 0 0 1 1 1 1 1 1 0 1 1 1 1 1 1 2 0 1 1 0 1 0 1 0 1 1 2 1 24
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme03g01456 Cme_Chr03 FPKM 5.289195 5.490152 0.673445 1.340025 9.691564 9.658089 10.700861 0.0 0.422656 0.0