Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01458 ATGTCATCACACACCTTACTTCTCCATTTCCCCATTTCCATTTCCCAAAGCCTCGATGCTCTTCTCCTTTCCCTTCTCCTCCTCTCCCTTTTCACCTTCTTCCTCCACCCCGGGGGCTTCGCTTGGGCCATTTCCAAGTGCAAAACCACCGCTTCCTCCGCCATCCCCGGCCCTTCCGGCCTCCCATTCATCGGCCTTCTCCACATCTTCACTCTCTCTACTCCTCACAAATCCCTCTCTGCTCTCGCCAATCGATTTAAAGCGTACCCTTTAATGGCTTTCTCTGTTGGCTTAACTCGGTTTGTGATTTCTAGTCATCCCGACGTTGCTAAAGAGATTCTTAATAGCCCTTCCTTTGCTGATAGACCTGTGAAAGAGTCTGCTTATGAACTGCTTTTTCACAGAGCAATGGGGTTTGCTCCTTATGGTGAGTATTGGAGGAATTTGAGAAGGATTTCTGCTACTTACATGTTTAGTCCTAAGAGAATAGCTGGGTTTCAAGGGTTTAGGAAAGAAGTTGGGTTTAAAATGGTGAGGGAAATTGAGAAATCCATGGTTTTAAAAGGGGATGTTAGAGTTAAGGAGATTCTTCATTTTGGGTCTTTGAATAATGTGATGATGACTGTTTTTGGGAAATGTTATGAGTTTTGTAACGACGAGAGAGATGGGCTTGAGCTAGAGGAGTTGGTTAAAGAAGGGTATGATTTACTTGGTATTTTTAATTGGAGTGATCACTTTCCTTTGTTGGGGTTCTTGGATTTACAAGGTGTGAGGAAAAGATGTAGATGTTTGGCTTCTAAGGTTAATGTATTTGTGGGGAAAATCATCGAGGAACATAGAATGAAGAGGGAAATCAAGGAATTTCATCAAGAAGAACAAGAACATAATAAAGATTTTGTTGATGTTCTGCTTGATTTGGAGAAAGATGACAAACTCTCAGATTCTGATATGATTGCTGTTCTTTGGGAAATGATATTTAGAGGAACTGACACAGTAGCCATACTTCTAGAATGGATTTTAGCAAGAATGGTAATACATCCAGAAATCCAAACCAAAGCACAAAACGAAATTGATTCAGTAATAGGCAAGAAATGGAGAGCCATTTCAGATGATGATATTCAAAAGCTTCCATATCTTCAAGCTATTGTGAAGGAATGTTTAAGAATGCACCCACCAGGGCCACTTCTATCATGGGCAAGACTAGCGGTAGCGGACGTACACGTTGACGGGAGGGTTATACCGGCCGGGACGACGGCAATGGTGAACATGTGGGCAATAACACATGATGAGAAGGTATGGAAAGATGCAGAGAAATTTGATCCAAACAGATTCATGGAAGAAGAAGTTAGTGTTATGGGAAGTGATTTGAGATTGGCCCCATTTGGGGCAGGGAGAAGAGTTTGTCCTGGAAAAGCAATGGGATTGGCTACTGTCCATCTCTGGTTGGCTCAGTTGCTTCAAGCTTACAAATGGATGCCTTGTTCTGATGAATCCACTAATGGTGTTGACTTGTCAGAGTGTCTTAAACTCTCAATGGAAATGAAAACTCCATTGGTTTGCAGAGCTGTTCCTAGGCCTGCTTGGTGA 1587 42.6 MSSHTLLLHFPISISQSLDALLLSLLLLSLFTFFLHPGGFAWAISKCKTTASSAIPGPSGLPFIGLLHIFTLSTPHKSLSALANRFKAYPLMAFSVGLTRFVISSHPDVAKEILNSPSFADRPVKESAYELLFHRAMGFAPYGEYWRNLRRISATYMFSPKRIAGFQGFRKEVGFKMVREIEKSMVLKGDVRVKEILHFGSLNNVMMTVFGKCYEFCNDERDGLELEELVKEGYDLLGIFNWSDHFPLLGFLDLQGVRKRCRCLASKVNVFVGKIIEEHRMKREIKEFHQEEQEHNKDFVDVLLDLEKDDKLSDSDMIAVLWEMIFRGTDTVAILLEWILARMVIHPEIQTKAQNEIDSVIGKKWRAISDDDIQKLPYLQAIVKECLRMHPPGPLLSWARLAVADVHVDGRVIPAGTTAMVNMWAITHDEKVWKDAEKFDPNRFMEEEVSVMGSDLRLAPFGAGRRVCPGKAMGLATVHLWLAQLLQAYKWMPCSDESTNGVDLSECLKLSMEMKTPLVCRAVPRPAW 528
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 23861080 23863281 - MELO3C011413.2.1 Cme03g01458 323469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01458 528 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 461 470 IPR017972 GO:0005506|GO:0016705
Cme03g01458 528 PANTHER CYTOCHROME P450 78A5 1 525 - -
Cme03g01458 528 PRINTS P450 superfamily signature 327 344 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme03g01458 528 PRINTS P450 superfamily signature 381 392 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme03g01458 528 PRINTS P450 superfamily signature 459 468 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme03g01458 528 PRINTS P450 superfamily signature 468 479 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme03g01458 528 PRINTS E-class P450 group I signature 316 333 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme03g01458 528 PRINTS E-class P450 group I signature 336 362 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme03g01458 528 PRINTS E-class P450 group I signature 380 398 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme03g01458 528 PRINTS E-class P450 group I signature 422 446 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme03g01458 528 PRINTS E-class P450 group I signature 458 468 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme03g01458 528 PRINTS E-class P450 group I signature 468 491 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme03g01458 528 Pfam Cytochrome P450 56 504 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme03g01458 528 PANTHER CYTOCHROME P450 78A7-RELATED 1 525 - -
Cme03g01458 528 SUPERFAMILY Cytochrome P450 55 525 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme03g01458 528 Gene3D Cytochrome P450 43 522 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01458 Cme-Chr3:23861080 Cme11g00196 Cme-Chr11:2349690 5.03E-171 dispersed
Cme10g00659 Cme-Chr10:4202033 Cme03g01458 Cme-Chr3:23861080 0 transposed
Cme11g02256 Cme-Chr11:29665912 Cme03g01458 Cme-Chr3:23861080 0 transposed
Cme12g01927 Cme-Chr12:25293372 Cme03g01458 Cme-Chr3:23861080 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01458 K20619 - csv:101221468 1013.83