Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01461 ATGGGAAGGGGAAGAGTAGAGTTGAAGAAGATAGAGAACAAAATAAATCGACAAGTTACATTCACAAAAAGAAGAAATGGACTTCTTAAAAAGGCTTATGAACTCTCCATTTTGTGTGATGCTGAAGTTGCTTTGATCGTCTTCTCCGCTCGTGGCAAACTCTATGAATTCTCAAGCTCTTCCAGTATAGGGAAGACCCTGGAGAGGTATGAAAGGCATAGCTATGGTGCATTGGAAGCCTCCCACCCTCCAAAGGACACTGAGAGATGGTATCAAGAGTATTTGAAGCTGAAAGCAGAAGTGGAAGCTTTACAATATTCCCAGAGACGATTTCTTGGAGAAGAATTGGATGATTTGGAGTCAAAGGAATTAGACCAACTAGAAATTCAACTGGAGATGTCTCTAAAGCAAATTAGATCTACTAAGAGACAAACGATGTTTGATCAATTATCTGATCTCCAAAAAAAGGAAGATAGGCTGCTGGAAACAAATCAAGCTTTGAGGAAAAAGTTAGAGGAAAGCAGTGGAGCTATTCATCATACATCGTGGGATTCTTCAGAGGCCAACAATTTGCAATACTGCAGACAACCTGAGGCCTTTCTTCAACTCAATAATAATATTATTGCATTGGAAAATAGTTACAATCCAACTGAAGTTACAAATGAAGAAAATGTTGTGAACTCTGGGGCAGATGGCAATGGATTGTCTTCACATTGGATGCTGCTTTGA 729 39.37 MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIVFSARGKLYEFSSSSSIGKTLERYERHSYGALEASHPPKDTERWYQEYLKLKAEVEALQYSQRRFLGEELDDLESKELDQLEIQLEMSLKQIRSTKRQTMFDQLSDLQKKEDRLLETNQALRKKLEESSGAIHHTSWDSSEANNLQYCRQPEAFLQLNNNIIALENSYNPTEVTNEENVVNSGADGNGLSSHWMLL 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 23893794 23897701 + MELO3C011410.2.1 Cme03g01461 323472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01461 242 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cme03g01461 242 SUPERFAMILY SRF-like 2 83 IPR036879 GO:0003677|GO:0046983
Cme03g01461 242 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cme03g01461 242 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Cme03g01461 242 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cme03g01461 242 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Cme03g01461 242 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 228 - -
Cme03g01461 242 PANTHER DEVELOPMENTAL PROTEIN SEPALLATA 1 1 228 - -
Cme03g01461 242 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cme03g01461 242 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cme03g01461 242 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cme03g01461 242 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cme03g01461 242 Coils Coil 124 144 - -
Cme03g01461 242 Coils Coil 150 173 - -
Cme03g01461 242 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cme03g01461 242 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01461 Cme-Chr3:23893794 Cme07g01021 Cme-Chr7:11591766 9.17E-82 dispersed
Cme09g00032 Cme-Chr9:268946 Cme03g01461 Cme-Chr3:23893794 7.40E-32 dispersed
Cme12g01580 Cme-Chr12:23153682 Cme03g01461 Cme-Chr3:23893794 2.96E-48 dispersed
Cme03g01461 Cme-Chr3:23893794 Cme03g01462 Cme-Chr3:23903289 2.33E-51 tandem
Cme12g01920 Cme-Chr12:25234067 Cme03g01461 Cme-Chr3:23893794 1.17E-56 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41039 PF01486 K-box 5.00E-27 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01461 K09264 - csv:101220998 452.595