Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01462 ATGGGAAGAGGTAGGGTTCAATTGAAAAGGATTGAGAACAAAATAAACAGGCAAGTAACTTTCTCAAAAAGGAAAGCTGGATTACTGAAGAAGGCTCATGAAATCTCTGTTCTTTGTGATGCTGAAGTTGCTTTGATTGTTTTCTCCCACAAAGGAAAGCTCTTTGAATACTCCTCTGATTCCAGCATGGAGAAAATACTTGAACGATACGAGAGATATTCTTTTGTGGGAAGGCAACAAAATGCAGCTTCTGAATCTCATTTTTCTCATGAAAATTGGACTCTTGAATACTACAGACTCAAGTCCAAAGTCGAACTTCTACAACGAAACAACAGTCATTATGTGGGAGAAGATTTGGATTCGTTGAGTGTCAAAGAACTGCAAAACTTGGAACAACAAATTGACACTGCACTTAAACATGTTCGATCCAGAAAAGTCAGGGTAAGAACAATAGAGGAGAACAATGCCCAACTGGCTAAGGAGATAAAGGAGAAAGAGAAGAGTGTAGCATTGGCACAACAAGCAGAATGGGAGCACCAGCAACACCATGGTTACAGTGCTTTGTCTTTCTTATTCCCACCACCTCCTCATCCCTCTCTAAACATTGGAATAAACATGGTTGTTAACATGTTTGTATAG 639 39.44 MGRGRVQLKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYSSDSSMEKILERYERYSFVGRQQNAASESHFSHENWTLEYYRLKSKVELLQRNNSHYVGEDLDSLSVKELQNLEQQIDTALKHVRSRKVRVRTIEENNAQLAKEIKEKEKSVALAQQAEWEHQQHHGYSALSFLFPPPPHPSLNIGINMVVNMFV 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 23903289 23910044 + MELO3C011409.2.1 Cme03g01462 323473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01462 212 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cme03g01462 212 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cme03g01462 212 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cme03g01462 212 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cme03g01462 212 SUPERFAMILY SRF-like 2 88 IPR036879 GO:0003677|GO:0046983
Cme03g01462 212 CDD MADS_MEF2_like 2 74 IPR033896 GO:0000977|GO:0045944
Cme03g01462 212 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cme03g01462 212 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 185 - -
Cme03g01462 212 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Cme03g01462 212 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A 1 185 - -
Cme03g01462 212 ProSiteProfiles K-box domain profile. 90 183 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cme03g01462 212 Coils Coil 148 175 - -
Cme03g01462 212 Pfam K-box region 86 167 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cme03g01462 212 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cme03g01462 212 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01462 Cme-Chr3:23903289 Cme12g01920 Cme-Chr12:25234067 3.07E-78 dispersed
Cme03g01461 Cme-Chr3:23893794 Cme03g01462 Cme-Chr3:23903289 2.33E-51 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41040 PF01486 K-box 1.30E-19 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01462 K09264 - csv:101219414 358.221