Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01481 ATGTCCTCCGCCCACCCTCCTTCCTCCCCCGCCACCGGTGTCGGTCTCGGCTACGGCATTGCCATTGCCGTCAGCATCCTCGTCTTCATCTCCACCGTCATGCTCATCTCCTACGCCTGCATTCGCGTCAAATCCAGTACTCGTCCCCGTCCTCGTCCCTCCGCTAATTCCCTCCCCTCTCCCCCTGCGGCCACCGTCGACAATGTGGTGGTCCTCATGGTTGGATTAGACGGCTCCATCATCGAATCTTACCCTAAATTGGTCCTCGGAGAGAGTCGTCGTCTTCCTCCCCCTAACAATGGCCCTTGCTCCATTTGCCTCTCTGATTACAAGCCCCACGATTCTGTTCGATGCATTCCCGATTGTCGACATTGTTTTCACTCCGATTGCGTCGATGAATGGCTTCGTATGAGCGCTACTTGTCCTTTGTGTCGAAATTCCCCAGCTCCAACCCCCGTTGCTACTCCTCTCTCTGAATTCGTGCCTCTGGCTTCCCATGCTAGGTGA 507 56.02 MSSAHPPSSPATGVGLGYGIAIAVSILVFISTVMLISYACIRVKSSTRPRPRPSANSLPSPPAATVDNVVVLMVGLDGSIIESYPKLVLGESRRLPPPNNGPCSICLSDYKPHDSVRCIPDCRHCFHSDCVDEWLRMSATCPLCRNSPAPTPVATPLSEFVPLASHAR 168
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 24026283 24026789 + MELO3C011390.2.1 Cme03g01481 323492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01481 168 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
Cme03g01481 168 Pfam Ring finger domain 103 145 IPR001841 -
Cme03g01481 168 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 16 150 - -
Cme03g01481 168 PANTHER RING-H2 FINGER PROTEIN ATL69-RELATED 16 150 - -
Cme03g01481 168 SUPERFAMILY RING/U-box 98 150 - -
Cme03g01481 168 SMART ring_2 103 144 IPR001841 -
Cme03g01481 168 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 150 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01481 Cme-Chr3:24026283 Cme08g01150 Cme-Chr8:8111962 2.94E-37 dispersed
Cme03g01481 Cme-Chr3:24026283 Cme07g01560 Cme-Chr7:21454876 9.17E-36 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01481 - - csv:101221006 304.293