Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01483 ATGGCTACTGAGGGAAGTCCCAGGACTGATATCTCAACAGATGGGGACACAGATGAAAAAAGCCGGAGGCCTGATAGAGGCCAACTTGCTCTTACTATGGCTTCTGATTCTAGTGACAGATCAAAGGATAAGACTGATCAGAAGACTCTTCGGCGGCTAGCACAAAATCGTGAGGCTGCAAGGAAAAGCCGTTTGAGGAAAAAGGCATACGTTCAACAACTAGAAAGCAGTCGATTAAAGTTGACACAACTTGAGCAGGAGCTTCAGCGAGCACGACAGCAGGGAATTTTCATATCAAGCTCGGGTGACCAGACCCATTCAATGAGTGGAAATGGGGCCATGGCATTTGATGTAGAATATGCCCGATGGCTTGAAGATCACAACCGTCAATTGAACGAATTGAGATCGGCTGTTAACTCACATGCAAGTGACCCGGAATTGCGTATTGTTGTCGATGGCATCTTGGTTCATTATGATGAGCTCTTTAGGCTCAAGGGAAATGCAGCAAAAGCTGACGTTTTCCACTTACTATCAGGCATGTGGAAAACACCTGCAGAAAGATGTTTTCTTTGGCTTGGGGGTTTTCGTTCATCCGAGCTCTTAAAGCTTCTTGTAAATCAACTGGAGCCTCTAACAGAGCAGCAGTTGGTGGGAATCACAAACTTGCAGCAATCATCACAGCAGGCAGAAGATGCATTATCACAAGGGATGGAGGCCTTGCAACAGTCCCTGGCAGAGACATTATCGAGTGGAGCTCTTGGTTCCTCTGGTTCGTCAGGGAATGTCGCAAACTACATGGGTCAAATGGCCATGGCCATGGGTAAACTAGGGACCCTCGAGGGCTTTATACGCCAAGCCGACAATCTACGACAACAGACACTTCAACAAATGCACCGAATATTGACAACTCGTCAGTCTGCTCGTGCACTTCTCGCCATACACGACTACTTCTCCAGACTACGTGCTCTTAGTTCGCTCTGGCTTGCTCGTCCCAGAGAGTAA 1002 47.6 MATEGSPRTDISTDGDTDEKSRRPDRGQLALTMASDSSDRSKDKTDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQTHSMSGNGAMAFDVEYARWLEDHNRQLNELRSAVNSHASDPELRIVVDGILVHYDELFRLKGNAAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLVNQLEPLTEQQLVGITNLQQSSQQAEDALSQGMEALQQSLAETLSSGALGSSGSSGNVANYMGQMAMAMGKLGTLEGFIRQADNLRQQTLQQMHRILTTRQSARALLAIHDYFSRLRALSSLWLARPRE 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 24038498 24045878 - MELO3C011388.2.1 Cme03g01483 323494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01483 333 ProSiteProfiles DOG1 domain profile. 113 330 IPR025422 GO:0006351|GO:0043565
Cme03g01483 333 PANTHER TRANSCRIPTION FACTOR TGA2.3-LIKE ISOFORM X1 4 333 - -
Cme03g01483 333 Pfam bZIP transcription factor 48 88 IPR004827 GO:0003700|GO:0006355
Cme03g01483 333 Pfam Seed dormancy control 130 205 IPR025422 GO:0006351|GO:0043565
Cme03g01483 333 SMART brlzneu 44 107 IPR004827 GO:0003700|GO:0006355
Cme03g01483 333 Coils Coil 67 94 - -
Cme03g01483 333 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 46 90 IPR004827 GO:0003700|GO:0006355
Cme03g01483 333 MobiDBLite consensus disorder prediction 1 50 - -
Cme03g01483 333 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 51 66 IPR004827 GO:0003700|GO:0006355
Cme03g01483 333 SUPERFAMILY Leucine zipper domain 48 91 IPR046347 GO:0003700|GO:0006355
Cme03g01483 333 Gene3D - 47 99 - -
Cme03g01483 333 Coils Coil 124 144 - -
Cme03g01483 333 MobiDBLite consensus disorder prediction 11 26 - -
Cme03g01483 333 PANTHER TRANSCRIPTION FACTOR TGA9 4 333 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01483 Cme-Chr3:24038498 Cme10g00013 Cme-Chr10:143381 0 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41042 PF14144 DOG1 1.00E-31 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01483 K14431 - csv:101213210 595.504