Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01491 CTGTTAACAGTTAAAGCTCCAAGCTTTTCTTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCGGTATCAATTTGCTTCAGAGTCTGTAGCTGTGAAGCTAAAGATGAGTAATTTGAGGACAGTGTGTAGGCCTCATGCCATGTTTTCTTCCTTCATCTTTAGCAGCGGATTCCGATCTATCCCCACGGTTTCCTTTTGGAACCCTAATAACAAACGCCGGTTCTCACTTTTTTCTCACACCTTCAATTCCTCGCCCTGCTTTTGTCCCACCCAGAACTGGTTCCGTATCAATCAGCGGAGAACGCTCGCCATGGCTTCCAATTGGGCTAACGAAAAATCTCCTTATGAAACTCTCGAATTAGAGAGGGATGCTGATGATGAACAGATAAAAAGTTCGTATAGACGCTTGGCTAAATTTTATCATCCGGATGGTTTGCTCCTTGCTCAAATACATAATCATTTCCAGTCGCTAAATTTATTGGAGTTATGCATAAGAATGCCGAGGAGAGGAACTCTTGAAGAAGGAGAAACAACTGAAGCTAGATTCATCAAGATTCAAGCTGCTTATGAATTGCTCATAGATGATGAGAAGCGGAGGCAGTATGATGTAGATAATCGAGTTAATCCAATGAAGGCATCTCAAGCATGGATGGAGTGGCTTATAAAAAAGCGCAAAGCTTTCGATCAACGGGGCGAGATGGCAATAGCGGCTTGGGCTGAGCAACAGCAGCGTGAGATGAATCTAAGAGCTCGACGCCTTTCTCAATCAAAGGTTGATCCTTTCGAAGAGAAAAGATTACTGGCAAAAGAAAAGAAGGCGTCAATAGAGTACTTTAACAGCACACTGAAGCGCCACGTACTTGTCTTGAAGAAAAGGGATATAATGAGAAGAAAAGCAGAGGAGGAAAAGAAGAAGGTAATAAGCCAACTTTTAGCTGAGGAAGGCCTCGAGCTCGATACAGATGATGATGACAACCTGTAG 981 42.81 LLTVKAPSFSSLLLLLLLLLRYQFASESVAVKLKMSNLRTVCRPHAMFSSFIFSSGFRSIPTVSFWNPNNKRRFSLFSHTFNSSPCFCPTQNWFRINQRRTLAMASNWANEKSPYETLELERDADDEQIKSSYRRLAKFYHPDGLLLAQIHNHFQSLNLLELCIRMPRRGTLEEGETTEARFIKIQAAYELLIDDEKRRQYDVDNRVNPMKASQAWMEWLIKKRKAFDQRGEMAIAAWAEQQQREMNLRARRLSQSKVDPFEEKRLLAKEKKASIEYFNSTLKRHVLVLKKRDIMRRKAEEEKKKVISQLLAEEGLELDTDDDDNL 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 24174035 24176336 + MELO3C011379.2.1 Cme03g01491 323502

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01491 326 ProSitePatterns Nt-dnaJ domain signature. 182 201 IPR018253 -
Cme03g01491 326 PRINTS DnaJ domain signature 115 133 IPR001623 -
Cme03g01491 326 PRINTS DnaJ domain signature 177 197 IPR001623 -
Cme03g01491 326 PRINTS DnaJ domain signature 223 242 IPR001623 -
Cme03g01491 326 PRINTS DnaJ domain signature 133 148 IPR001623 -
Cme03g01491 326 SMART dnaj_3 112 197 IPR001623 -
Cme03g01491 326 CDD DnaJ 114 194 IPR001623 -
Cme03g01491 326 SUPERFAMILY Chaperone J-domain 108 203 IPR036869 -
Cme03g01491 326 Gene3D DnaJ domain 100 219 IPR036869 -
Cme03g01491 326 PANTHER LD30543P 93 324 - -
Cme03g01491 326 ProSiteProfiles dnaJ domain profile. 113 205 IPR001623 -
Cme03g01491 326 PANTHER CO-CHAPERONE PROTEIN DJLA 93 324 - -
Cme03g01491 326 Pfam DnaJ domain 114 157 IPR001623 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01491 - - - csv:101214898 459.144
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01491 Cme-Chr3:24174035 Cme07g02018 Cme-Chr7:25214555 7.82E-08 dispersed
Cme03g01491 Cme-Chr3:24174035 Cme09g01428 Cme-Chr9:19478319 7.03E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g345 . . . . Bpe02g00088 . . Bma01g02630 . . . . . . Sed04g0058 . . Bhi04g00721 Tan02g2350 Cmetu03g2083 . . . . Cla08g01081 Cam08g1532 Cec08g1108 Cco08g1235 Clacu08g1237 . Cre08g1018 . . . . . . . Cme03g01491 . . Bda11g00754 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g00937 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005322 1 1 0 1 1 3 1 3 1 1 2 3 1 1 1 1 3 2 1 1 1 1 1 1 1 1 1 1 2 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme03g01491 Cme_Chr03 FPKM 12.169537 12.946586 9.452484 9.901408 13.406667 12.52976 12.980735 7.986159 6.708303 6.285971