Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01499 ATGGCAGCTTTTGCTCTCTCAAATTACACTCTCTTTTCTCCTCGTCCTTCTTCCCCATTCCTTTCTTCTTCCTCTAAAACCCTAGATTCCACATCCCCTTTTCACCAACCTCTTCCTCTTCTTCATAATCCTCGCCATCGCTCTCGTCTTTGTGACCCATTATTTAGTTTCTCTCCCACCTCCTCTTCTTCTCCACTTACACGTTCTTTCGCACCCTGTCTTTCTGCTCATAGTTCTGTTGCCAATACCCTCATCGAGGTGTACCGAGAAGCTTTTCTCGATGGAGATCAGAAGACTGTTTCTGAAGTCGAGGCAAGAATAAAAATAATTGGGAGGGAGAAGGATGAGTTGTCCCGGAAATTGTCGAATATATTGACGGAGATGACGTCTGGGAAAGAGAAATATATACGCTTACAAGCTGACTTTGATAATTTTAGGAAAAGATCAGAAAAAGAACAACATAATGTGAAGAATAATGCTCAAAAGGAGGTTATTGAGAGCCTATTACCAATGATCGACCATTTTGAGAAAGCTAGACAACAAATTGTTCCTCAAACTGACAAGGAGAAGAAGATTGACATAAGTTACCAGGGAATATACAAGCAATTTGTGGAGACGTTGAGGAGCTGGCGTGTCTCGGCCGTTGCCACAGTAGGAAGACCATTTGATCCCTCGTTACATGAAGCTGTAGCACGAGAGGAGTCGCAGGAGATAAAGGAAGGGATCGTTATTCAAGAATTAAGACGTGGGTTTTTGCTCGGTGAACGACTTCTAAGACCAGCAAGAGTAAAAGTTTCAAAAGGTCCCGGTAGGAAGAGTTCTCGCACAATCGACGGGAAGCAACAACCTGCAGCTGCTGCTGGAGTAGATGAACACTGA 879 43.69 MAAFALSNYTLFSPRPSSPFLSSSSKTLDSTSPFHQPLPLLHNPRHRSRLCDPLFSFSPTSSSSPLTRSFAPCLSAHSSVANTLIEVYREAFLDGDQKTVSEVEARIKIIGREKDELSRKLSNILTEMTSGKEKYIRLQADFDNFRKRSEKEQHNVKNNAQKEVIESLLPMIDHFEKARQQIVPQTDKEKKIDISYQGIYKQFVETLRSWRVSAVATVGRPFDPSLHEAVAREESQEIKEGIVIQELRRGFLLGERLLRPARVKVSKGPGRKSSRTIDGKQQPAAAAGVDEH 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 24221630 24223746 - MELO3C011373.2.1 Cme03g01499 323510

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01499 292 CDD GrpE 132 265 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Cme03g01499 292 MobiDBLite consensus disorder prediction 10 37 - -
Cme03g01499 292 PANTHER GRPE PROTEIN HOMOLOG 1 279 - -
Cme03g01499 292 SUPERFAMILY Head domain of nucleotide exchange factor GrpE 214 269 IPR009012 GO:0006457
Cme03g01499 292 PANTHER GRPE PROTEIN 1 279 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Cme03g01499 292 Pfam GrpE 112 267 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Cme03g01499 292 Gene3D Head domain of nucleotide exchange factor GrpE 212 267 IPR009012 GO:0006457
Cme03g01499 292 Hamap Protein GrpE [grpE]. 89 267 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Cme03g01499 292 ProSitePatterns grpE protein signature. 222 265 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Cme03g01499 292 Gene3D - 95 208 IPR013805 -
Cme03g01499 292 Coils Coil 100 120 - -
Cme03g01499 292 MobiDBLite consensus disorder prediction 10 39 - -
Cme03g01499 292 MobiDBLite consensus disorder prediction 264 292 - -
Cme03g01499 292 SUPERFAMILY Coiled-coil domain of nucleotide exchange factor GrpE 115 209 IPR013805 -
Cme03g01499 292 PRINTS GrpE protein signature 164 179 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Cme03g01499 292 PRINTS GrpE protein signature 246 265 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Cme03g01499 292 PRINTS GrpE protein signature 136 152 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Cme03g01499 292 PRINTS GrpE protein signature 219 234 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01499 K03687 GRPE; molecular chaperone GrpE - csv:101215875 488.419
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01499 Cme-Chr3:24221630 Cme08g01469 Cme-Chr8:13457571 1.13E-37 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g338 . . . . . . . . . . . . . Car12g00130 Sed04g0119 . Cpe07g00118 Bhi04g00711 Tan02g2357 Cmetu03g1212 . Hepe10g0529 . . Cla08g01087 Cam08g1539 Cec08g1113 Cco08g1240 Clacu08g1242 . Cre08g1023 . . . . . Csa04g01882 . Cme03g01499 . . . . . . . Bma02g00258 . . . Cma12g00139 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012843 1 1 1 2 0 1 1 1 1 1 1 1 1 1 1 0 1 2 0 1 1 1 1 1 1 0 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme03g01499 Cme_Chr03 FPKM 0.774603 0.0 0.0 1.262391 0.0 3.136149 2.505964 2.883743 1.159396 1.69459