Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01500 ATGATGGACCCAAATCTTTGGCGTGCTTTTTCCGGTAATTCTGCTCATATCCACACTGTCGGTTCTGAAGTTTACTATTTCGTTCAAGGACATCTTGAACAAGCTACTTACGTTCCGACACTTTCTCGGTCTGTTCTTTCTAACCCTACTACTAAATGTATCGTTTCTGCTGCTGATTACACTGCGGATCCACTTACTGATGAGGTCTGTCTTAAGTTCAATCTTAATCCAATTCCTCCTGGTCAGAGTGTGTCTCAAGTGGTTCATCCATTTAGTGGTGGTGATGATGGTAATGGGCAGCGGAATAGAATTGAGAAGTTCGCTAAGGTTCTTACGTCATCTGATGCTAATAATGGCGGTGGATTTTCTGTGCCGCGGTATTGTGCCGATTCTATTTTTCCTCCGTTGAATTATCAGGTTGAACCGCCGGTACAGACTTTGGCGATTACTGATGTTCATGGAGTTGTTTGGAATTTTCGTCACATTTACCGTGGGACGCCGAGGCGGCATTTGCTTACTACTGGGTGGAGTAAGTTCGTGAATCATAAGAAGCTGATTGCTGGTGATGCTGTCATTTTCGCCAGGAATTCTAACGGGGATATGTTTGTTGGCATTCGTCGAAGCTCTAAGAGCATTGGGGGCGGTGATTGCAGCAAATGGAATAGCCAGGTGCCGGCCGAGACTGTTGCTCATGCTGCGGAGTTAGCCGCGGAATTTAAGCCGTTCGAGGTGGTTTATTATCCTAGGACTGGTACGTCTGAATTTGTTATACCAGCTGAGAAAGTGAACAATTCGTTGAATTATCAGTGGTATCCTGGAATAAGAGTGAAAATGCCTGTGGAGACGGAGGATTCTTTGAAGACGCAATGGTATCAAGGGACTGTAACCTCAGCATCTGTTCCTGCTCACGGTCCTTGGAAGGGTTCTCCATGGCGTATGCTTGAGGTTACATGGGAAGAAACTGATGCTCTGCAGAGTGCTAAGTTTGTGAGCCCTTGGGAGGTTGAACTTGCTTCGCCCTCTCCTCCCATACCCCCTCCTCTTCACTCAGCAAAGAAGTATAGAGGTCCACAAAAATCTGGGATGGTGAATAGTGAAGCTGATCTGTTTTCACCTATGATGAGATTCGGTGATTCAACAATGGGGCAATTCAATCAATCATTGTTGAGTTTTAACTCTTTTCCTGCTGGCATGCAGGGAGCCAGGCAAAATTTTTTCCGTGAATCTGGGTCATTCAATGCATATAATGAAATTTCTCCACCAACATCTGATGAAAATTCTATGTTCAAGCTGAACACAGTGCCAAAGACACAAACGGTGTCTACTGATCTCCATATTGGTAGTGTGCAATCGGATACCTTATCACCTGATAGTCAGGCTAGTGTTCTTTCCTTTGCCACAGGAACAGCTGAGAACCAGAGCTGCAACTCAACTAAAGCTGGAGTAAATTCATTCCAATTGTTTGGTCAAATCATCTATATGAGTCCTCCTGTCGAAAAAGAAATTGACAATGGTGCTGACAGTGATGATGGTGACAAGAAGCGTAAACAGTGCAATTGA 1560 44.62 MMDPNLWRAFSGNSAHIHTVGSEVYYFVQGHLEQATYVPTLSRSVLSNPTTKCIVSAADYTADPLTDEVCLKFNLNPIPPGQSVSQVVHPFSGGDDGNGQRNRIEKFAKVLTSSDANNGGGFSVPRYCADSIFPPLNYQVEPPVQTLAITDVHGVVWNFRHIYRGTPRRHLLTTGWSKFVNHKKLIAGDAVIFARNSNGDMFVGIRRSSKSIGGGDCSKWNSQVPAETVAHAAELAAEFKPFEVVYYPRTGTSEFVIPAEKVNNSLNYQWYPGIRVKMPVETEDSLKTQWYQGTVTSASVPAHGPWKGSPWRMLEVTWEETDALQSAKFVSPWEVELASPSPPIPPPLHSAKKYRGPQKSGMVNSEADLFSPMMRFGDSTMGQFNQSLLSFNSFPAGMQGARQNFFRESGSFNAYNEISPPTSDENSMFKLNTVPKTQTVSTDLHIGSVQSDTLSPDSQASVLSFATGTAENQSCNSTKAGVNSFQLFGQIIYMSPPVEKEIDNGADSDDGDKKRKQCN 519
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 24227557 24231136 - MELO3C011372.2.1 Cme03g01500 323511

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01500 519 MobiDBLite consensus disorder prediction 502 519 - -
Cme03g01500 519 CDD B3_DNA 107 207 IPR003340 GO:0003677
Cme03g01500 519 MobiDBLite consensus disorder prediction 499 519 - -
Cme03g01500 519 Gene3D - 270 341 - -
Cme03g01500 519 Gene3D - 104 208 IPR015300 -
Cme03g01500 519 ProSiteProfiles B3 DNA-binding domain profile. 107 209 IPR003340 GO:0003677
Cme03g01500 519 SUPERFAMILY DNA-binding pseudobarrel domain 102 211 IPR015300 -
Cme03g01500 519 Pfam Auxin response factor 232 314 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cme03g01500 519 SMART B3_2 107 209 IPR003340 GO:0003677
Cme03g01500 519 PANTHER AUXIN RESPONSE FACTOR 2 217 - -
Cme03g01500 519 PANTHER AUXIN RESPONSE FACTOR 222 516 - -
Cme03g01500 519 Pfam B3 DNA binding domain 107 208 IPR003340 GO:0003677
Cme03g01500 519 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 2 217 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cme03g01500 519 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 222 516 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01500 - - - csv:101216118 952.199
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01500 Cme-Chr3:24227557 Cme11g01803 Cme-Chr11:26202658 7.91E-111 dispersed
Cme03g01500 Cme-Chr3:24227557 Cme12g01152 Cme-Chr12:19599255 4.33E-59 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g337 . . . . . . . . . . . . . . Sed04g0120 . . Bhi04g00710 Tan02g2359 Cmetu03g1655 . . . . Cla08g01088 Cam08g1540 Cec08g1114 Cco08g1241 Clacu08g1243 . Cre08g1024 . . . . . . . Cme03g01500 Blo17g00126 Blo18g00139 . . . . Bma01g01425 . . . . Cma12g00140 . . . . . . . . . . . . . . . . . . . Lsi08g00944 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006011 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41043 PF02362 B3 2.30E-20 CL0405 Cme TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme03g01500 Cme_Chr03 FPKM 10.458388 11.98845 12.648054 13.174523 10.738308 13.478074 11.588892 17.803976 19.391014 18.588772