Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01505 ATGGCTCGACTTGTCATTCTCTTTGCTCTCATTATGCTTCCTGCTCTCGCCGTCGCTAGCCGCCCCGTCAGAACTCCGTTTGTTGTTCGTGGTAAAGTTTTCTGTGATACTTGCCTTGCCGGCTTTGAAACCTCCGCTACTACCTACATTCCCGGTGCTAAGGTCAGAATTGAATGCAAGGACAGGAACTCCATGGAAGTTCGATACACTCATGAGGCCACAACAGATTCCACCGGTTCTTACACGCTCTTAGTCAGTGAGGACCATGGTGACGAACTTTGTGATGCCGTACTAGTCAGCAGCCCTCAGGAGAAATGTTCGTCAGTAGCAGAAGGCCGTGACCGTGCCCGTGTGATCCTGACCCGTTACAATGGTATTGCCTCAAACGACCGTTATGTGAATGCCATGGGTTTTGCGATAGACGAACCTATGTCTGGGTGCAACCAAGTGATGAGTCAGTACCAGGACATTGAAGATTAG 480 50.0 MARLVILFALIMLPALAVASRPVRTPFVVRGKVFCDTCLAGFETSATTYIPGAKVRIECKDRNSMEVRYTHEATTDSTGSYTLLVSEDHGDELCDAVLVSSPQEKCSSVAEGRDRARVILTRYNGIASNDRYVNAMGFAIDEPMSGCNQVMSQYQDIED 159
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 24293859 24296240 + MELO3C011368.2.1 Cme03g01505 323516

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01505 159 PANTHER ALLERGEN-LIKE PROTEIN BRSN20 1 158 - -
Cme03g01505 159 Pfam Pollen protein Ole e 1 like 29 111 - -
Cme03g01505 159 PANTHER PROTEIN DOWNSTREAM OF FLC-RELATED 1 158 IPR006041 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01505 - - - csv:101211620 308.916
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme03g01505 Cme07g00859 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01505 Cme-Chr3:24293859 Cme07g01756 Cme-Chr7:23064784 1.02E-44 dispersed
Cme03g01505 Cme-Chr3:24293859 Cme11g02347 Cme-Chr11:30487941 3.97E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g285 . . . Bda03g00533 . Bpe04g00487 . . . . . . . . . . . Bhi04g01971 . . . . . . . . . . . . . Cone4ag1395 Cone7ag1542 . . Lsi04g02384 . . Cme03g01505 . . . Bda13g01485 . . . . . . . . . . . . . . . . . . . . Cla11g01531 Cam11g1590 Cec11g1619 Cco11g1620 Clacu11g1749 Cmu11g1565 Cre11g1981 . . . Cme07g00859
Vvi18g379 . Blo12g00697 . Bda03g00502 Bpe02g00095 Bpe04g00457 . . Cmo05g00507 Cmo12g00113 . . . Car12g00133 Sed04g0127 . Cpe07g00120 Bhi04g00736 Tan02g2367 Cmetu03g1991 . Hepe10g0520 . Lcy13g1582 Cla08g01092 Cam08g1545 Cec08g1119 Cco08g1246 Clacu08g1247 . Cre08g1029 . . Cone17ag1234 Cone20ag0491 . . . Cme03g01505 . Blo18g00213 . Bda01g01393 Bpe02g01607 . . . . . . Cma12g00143 Cma05g00485 Car05g00432 . Cpe11g00424 . . . . . . . . . . . . . . . Lsi08g00948 . Chy03g01015 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005917 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 0 1 1 1 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme03g01505 Cme_Chr03 FPKM 5.774256 6.130192 10.764892 10.584673 8.613163 8.315884 7.436689 21.379555 19.611782 22.182384