Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01510 ATGGCTGCTTTGATGGATTTGTATGGTTGCAGAGAGTTTCAGTCAGATCCATTTGGTGGTGAATTAATGGAAGCAATTGAACCTTTTATGAAAGTTGCTTCCTCTTCTTATTTTCCTTCTTCTTTTCCGGAATTCTCTTTCTCCTCCTCTTCTTCTTCTTCTTCTTCTTCTATCCCAACAGAGTCTACTTCTTACCCTTCTGATTGCTCTCCTCCGATGACCCATTTATTTTCCGATGGGTTTTCGGGTCAAGATTTCCGTGGCGTAGAGCAATCACCTTCTATTGGACTTAATTACTTAACCCCTTTTCAGATCCAACAGATCCAATCTCAATTCGGTCTCCAGACACAAATCCAGCCAGTTTGGGGACAGATCAACAACCAGGTAGTAAGAAATCAGAGCAACACCGCCGGAAATCTGCTTGGACCGAAGGGGATTCCGATGAAACACGTGGGATCTCCACCGAAATCGACGAAACTATACCGAGGCGTGAGGCAAAGGCATTGGGGAAAATGGGTGGCTGAGATCCGTCTTCCGAGGAACAGAACTCGGCTGTGGCTCGGCACCTTCGATACCGCCGAAGAAGCCGCTTTAGCTTATGACAAAGCCGCTTACAAGCTCCGAGGCGACTTCGCCCGACTCAATTTCCCTCACCTCAAGCACCATGGCTCCTCTGTCGGTGGCGATTTCGGCGAGTACAAACCGCTACACTCCGCCGTTGACGCTAAACTCGAAGCCATCTGCCAAACCTTGGCCGAGTCTCAGACAAAGGGGAAATCGGATCGGAGAAAGTCGAAGTCATCTGGTTCTTCAACCATTGCATCGGAACCTCAGGCCCCAACTGTCATCGATGCCGACGACGATTTGAAACCGGCGGATGCTGGATCAAGTGGGTCGGAGATCTGTTGCAAGGCGGAGAACTCCTCGTCACCGGTTTCGGCCGAGAGCGACGAGTCAGCAGGGTCTTCGCCGTTGTCAGATCTGACGTTCCAGGATACGACGGATTCGACATGGGAACAAGCTACAGAAAGCTGTATGTTGCAGAAATACCCATCGGAAATCGATTGGGCTTCGATATTCACAAATTGA 1089 49.59 MAALMDLYGCREFQSDPFGGELMEAIEPFMKVASSSYFPSSFPEFSFSSSSSSSSSSIPTESTSYPSDCSPPMTHLFSDGFSGQDFRGVEQSPSIGLNYLTPFQIQQIQSQFGLQTQIQPVWGQINNQVVRNQSNTAGNLLGPKGIPMKHVGSPPKSTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPHLKHHGSSVGGDFGEYKPLHSAVDAKLEAICQTLAESQTKGKSDRRKSKSSGSSTIASEPQAPTVIDADDDLKPADAGSSGSEICCKAENSSSPVSAESDESAGSSPLSDLTFQDTTDSTWEQATESCMLQKYPSEIDWASIFTN 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 24345359 24347298 + MELO3C011364.2.1 Cme03g01510 323521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01510 362 MobiDBLite consensus disorder prediction 253 338 - -
Cme03g01510 362 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 4 359 - -
Cme03g01510 362 CDD AP2 159 219 IPR001471 GO:0003700|GO:0006355
Cme03g01510 362 MobiDBLite consensus disorder prediction 49 69 - -
Cme03g01510 362 MobiDBLite consensus disorder prediction 301 338 - -
Cme03g01510 362 PRINTS Ethylene responsive element binding protein signature 161 172 IPR001471 GO:0003700|GO:0006355
Cme03g01510 362 PRINTS Ethylene responsive element binding protein signature 183 199 IPR001471 GO:0003700|GO:0006355
Cme03g01510 362 SMART rav1_2 160 223 IPR001471 GO:0003700|GO:0006355
Cme03g01510 362 Gene3D AP2/ERF domain 160 218 IPR036955 GO:0003700|GO:0006355
Cme03g01510 362 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-4 4 359 - -
Cme03g01510 362 Pfam AP2 domain 161 209 IPR001471 GO:0003700|GO:0006355
Cme03g01510 362 SUPERFAMILY DNA-binding domain 160 218 IPR016177 GO:0003677
Cme03g01510 362 ProSiteProfiles AP2/ERF domain profile. 160 217 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01510 Cme-Chr3:24345359 Cme07g00916 Cme-Chr7:9532937 9.99E-109 dispersed
Cme08g02169 Cme-Chr8:27722698 Cme03g01510 Cme-Chr3:24345359 1.79E-19 dispersed
Cme03g01510 Cme-Chr3:24345359 Cme06g01318 Cme-Chr6:11054626 1.96E-23 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41044 PF00847 AP2 4.80E-15 CL0081 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01510 K09286 - csv:101222833 629.402