Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01526 ATGGAGAAACTTCCTTTCGCATTTGCCTTCTTCTTTCTTGCTCTATCCAACTTCTTCTTCATTTTTGTCAATGCATTTACCGCGTCGGGATGGGCTCCCGCCCATGCTACCTTTTATGGCGAGAGCGATGCCTCTGGAACAATGGGTGGAGCTTGTGGGTATGGGAACTTATACCAGACGGGTTACGGGACGAGGACAGCAGCGCTGAGCACAGCATTGTTCAACGACGGAGCATCCTGCGGACAGTGTTTCAAGATCATATGCGATTACAAGACGGATCCACGGTGGTGCATTAAAGGGGCATCGGTGACCATAACAGCAACAAATTTCTGCCCACCAAACTACGCTCTACCAAACAACAATGGAGGGTGGTGTAACCCTCCGCTTAAGCATTTCGACATGGCTCAGCCTGCTTGGCAGAAGATCGGCATTTACAGGGGAGGAATCATCCCTGTCCTCTACCAAAGGGTTCCTTGCAAAAAGAGAGGAGGTGTAAGATTCACAGTGAATGGAAGAGACTATTTTGAACTTGTTCTAATAACCAATGTGGGAGGAGCTGGTGACATCAAATCGGTGTCTATTAAAGGCTCTAAATCAAGCAATTGGACCCCAATGTCAAGGAATTGGGGGGCCAATTGGCAATCCAATTCCTATCTAAATGGCCAATCTTTGTCCTTCAAGATCACCACAAGCGATGGCCAAACCCAAGTTTTCAACAACGCCGTGCCTTCATCTTGGAGATTTGGCCAAACATTCGCTAGTAGGGTCCAATTCAGGTGA 780 47.82 MEKLPFAFAFFFLALSNFFFIFVNAFTASGWAPAHATFYGESDASGTMGGACGYGNLYQTGYGTRTAALSTALFNDGASCGQCFKIICDYKTDPRWCIKGASVTITATNFCPPNYALPNNNGGWCNPPLKHFDMAQPAWQKIGIYRGGIIPVLYQRVPCKKRGGVRFTVNGRDYFELVLITNVGGAGDIKSVSIKGSKSSNWTPMSRNWGANWQSNSYLNGQSLSFKITTSDGQTQVFNNAVPSSWRFGQTFASRVQFR 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 24439410 24441196 + MELO3C011350.2.1 Cme03g01526 323537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01526 259 Gene3D - 21 160 IPR036908 -
Cme03g01526 259 Pfam Lytic transglycolase 66 154 IPR009009 -
Cme03g01526 259 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 49 164 IPR007112 -
Cme03g01526 259 PANTHER EXPANSIN 8 258 - -
Cme03g01526 259 SUPERFAMILY PHL pollen allergen 161 254 IPR036749 -
Cme03g01526 259 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 174 254 IPR007117 -
Cme03g01526 259 PANTHER EXPANSIN-A15 8 258 IPR002963 GO:0009664
Cme03g01526 259 SUPERFAMILY Barwin-like endoglucanases 19 182 IPR036908 -
Cme03g01526 259 Gene3D - 164 259 IPR036749 -
Cme03g01526 259 PRINTS Expansin signature 61 75 IPR002963 GO:0009664
Cme03g01526 259 PRINTS Expansin signature 90 101 IPR002963 GO:0009664
Cme03g01526 259 PRINTS Expansin signature 103 113 IPR002963 GO:0009664
Cme03g01526 259 PRINTS Expansin signature 122 139 IPR002963 GO:0009664
Cme03g01526 259 PRINTS Expansin signature 139 152 IPR002963 GO:0009664
Cme03g01526 259 PRINTS Expansin signature 163 175 IPR002963 GO:0009664
Cme03g01526 259 PRINTS Expansin signature 175 196 IPR002963 GO:0009664
Cme03g01526 259 PRINTS Expansin signature 211 232 IPR002963 GO:0009664
Cme03g01526 259 PRINTS Expansin signature 240 256 IPR002963 GO:0009664
Cme03g01526 259 SMART dpbb_1 66 154 IPR007112 -
Cme03g01526 259 Pfam Expansin C-terminal domain 165 243 IPR007117 -
Cme03g01526 259 PRINTS Expansin/Lol pI family signature 30 45 IPR007118 GO:0005576
Cme03g01526 259 PRINTS Expansin/Lol pI family signature 48 66 IPR007118 GO:0005576
Cme03g01526 259 PRINTS Expansin/Lol pI family signature 70 88 IPR007118 GO:0005576
Cme03g01526 259 PRINTS Expansin/Lol pI family signature 147 163 IPR007118 GO:0005576
Cme03g01526 259 PRINTS Expansin/Lol pI family signature 202 216 IPR007118 GO:0005576
Cme03g01526 259 PRINTS Expansin/Lol pI family signature 240 254 IPR007118 GO:0005576
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00340 Cme-Chr1:2543498 Cme03g01526 Cme-Chr3:24439410 4.22E-37 dispersed
Cme03g01526 Cme-Chr3:24439410 Cme03g01023 Cme-Chr3:19365612 5.37E-116 dispersed
Cme06g02122 Cme-Chr6:26871468 Cme03g01526 Cme-Chr3:24439410 7.88E-94 dispersed
Cme12g01117 Cme-Chr12:19131129 Cme03g01526 Cme-Chr3:24439410 3.77E-53 dispersed
Cme03g01526 Cme-Chr3:24439410 Cme10g00403 Cme-Chr10:2578552 2.50E-123 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01526 - - csv:101216569 512.686