Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01539 ATGGAGGAAATGTTAAAGCTAACCCATTTGTTGGTCACAGTATTTCTATATACTTTTGCAACCATGACGGCCTTTCCTGCCATTCCGGACGTCACCATGTCCGCTCTTTGTCCCGGTCGAGACGAATGTTCTCTCGCTATTTACTTCACTGGCTTTCAACAAGTCGTGACTGGAGTTGGTGCATTGTTAATGGTGCCGTTGCTTGGAAATCTCTCCGATAAGTTTGGGAGGAAGACCGTTCTCACCATTCCCTTGATTCTCAACGTAATTCCACTGGGGATATTGGGATATGGGAGATCGAGGGATTTGTTCTATATTTATTTTGTGTTCAAGTGTGTGACAAGCATCGTTTGTGAAGGGAGCGTTCAGTGCTTGGCTGTTGCTTATGCGGCCGACAATGTACCGGAGCACCGGCGAGCTTCTGCGTTCGGAATTTTATCTGCCATTATCTCTTCTGCTTCCGTCTGCGGGAATCTCTGTGCTCGTTTTCTCTCCATTTCATCCACGTTTCAGGCAGCGGCTTCCACGGCGGCTATGGCGGCTTTGTATATGAGGGTTTTCCTTACTGATTCTGCCTCTAATTGCAATCTTTCTGCTCCCTTACTATCTGGGGAGAACGTAGAATCTGTTTCATCTAAAAAGGAAAAATATGCTTCGGCCTTGCCTTCACTGACGGATCTTTTTTCCTTTTTGAAGACTAGCTCGACATTTTCACAAGCAGCCGTCGTTGCATTTTTTAGCAATCTTGCTGATGTTGGCCATCATGCTTCAATAATGATGCTTCTTCACAGCTTAGCTTGGTCTGAATGGCTGCAAAGCATAGTGTCGAAACAAGTTGGTGCAAGCGAGCAGGGTAAGGCTCAAGGATGCATTTCAGGCATATCTTCGTTTGCCAATGTTGTTTCTCCATTTGTATTCTCCCCTTTGACAGCTTTGTTTCTATCTGAAAACGCTCCATTTTATTTCCCTGGATTTAGCATCATGTGCGCTGCATCTGCTGCGAAAACTCTCCCAAATAGCCACCACGATACTGTTTTGAAGAGAGAGTAA 1050 45.33 MEEMLKLTHLLVTVFLYTFATMTAFPAIPDVTMSALCPGRDECSLAIYFTGFQQVVTGVGALLMVPLLGNLSDKFGRKTVLTIPLILNVIPLGILGYGRSRDLFYIYFVFKCVTSIVCEGSVQCLAVAYAADNVPEHRRASAFGILSAIISSASVCGNLCARFLSISSTFQAAASTAAMAALYMRVFLTDSASNCNLSAPLLSGENVESVSSKKEKYASALPSLTDLFSFLKTSSTFSQAAVVAFFSNLADVGHHASIMMLLHSLAWSEWLQSIVSKQVGASEQGKAQGCISGISSFANVVSPFVFSPLTALFLSENAPFYFPGFSIMCAASAAKTLPNSHHDTVLKRE 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 24516948 24524040 + MELO3C011337.2.1 Cme03g01539 323550

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01539 349 PANTHER MAJOR FACILITATOR SUPERFAMILY PROTEIN 5 262 - -
Cme03g01539 349 PANTHER MAJOR FACILITATOR SUPERFAMILY PROTEIN 271 333 - -
Cme03g01539 349 SUPERFAMILY MFS general substrate transporter 10 334 IPR036259 -
Cme03g01539 349 PANTHER MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN 10 271 333 - -
Cme03g01539 349 ProSiteProfiles Major facilitator superfamily (MFS) profile. 1 192 IPR020846 GO:0022857
Cme03g01539 349 PANTHER MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN 10 5 262 - -
Cme03g01539 349 Pfam Major Facilitator Superfamily 10 248 IPR011701 GO:0022857|GO:0055085
Cme03g01539 349 Gene3D MFS general substrate transporter like domains 5 336 IPR036259 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01539 - - - csv:105434628 468.388
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01537 Cme-Chr3:24499732 Cme03g01539 Cme-Chr3:24516948 3.82E-148 dispersed
Cme03g01538 Cme-Chr3:24507897 Cme03g01539 Cme-Chr3:24516948 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g159 . . . . . . . . Cmo05g00330 . . . . . . . . . . . . . . . Cla08g01397 Cam08g1874 Cec08g1451 Cco08g1585 Clacu08g1567 . Cre08g1351 . . . . . . . Cme03g01539 Blo17g00734 . Bda08g01188 . . Bpe05g00163 . . . . . . Cma05g00327 Car05g00274 . . . . . . . . . . . . . . . . . Lsi08g01291 . Chy03g01047 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000412 3 14 3 1 3 5 3 5 5 4 3 5 2 4 5 2 5 1 3 5 4 3 4 4 3 6 3 4 9 2 123