Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01540 ATGATGAACGGTCATGATGCGGAGCCGTTGGTGTACGTTCACGGCGACCTCGATTTGAAGATCATTGAGGCGCGGCATTTGCCTAATATGGATTTGCTAACGGAACGTATTCGGCGGTTTTTTACTGTTTTTAGTTCTTGTCGGAAACCGTTTTCCAAGAAGAAGGATAAGGAGGATCACCAGCATCACCGGAAGATTATTACTAGTGATCCCTACGTTACCGTTTGTCTTGCTGGAGCGACGGTTGCTCGGACACGAGTTATTTCGAATTCGCAGAACCCTATCTGGAATGAGCACTTCAATATCCCTCTTGCTCATCCGGTCTCGCAGGTGGAGTTTCATGTCAAGGATAATGATGTGTTTGGTGCGGATTTGATTGGTATTGCAACGGTCCCTGCGCGTAGAGTTCTTTCTGGCGAAACCATTGATGATTGGTTTCCGATAATCGGTACGTTCGGGAAACCGCCGAAGCCGGATTCGGCTGTGCGTTTGGAAATGAAATTCACCAAGTGCGAGGACAATCCTCTGTACCGTTATGGCATTGCGGCCGATCCAGAACATTTTGGCGTTCGGAATTGCTATTTTCCGGTAAGACATGGGGGTTCGGTAACGCTTTATCAGGACGCGCACGTTCCTGAGTCCATGTTGGAGAAGATTGAACTGGAAAAGGGGAATCTCTATCAGCATGAGAATTGCTGGGAGGATATATGCCATGCAATTTTGGAGGCTCACCATTTAGTCTACATTGCCGGTTGGTCCATATATCATAAGGTGAAGCTTGTGAGAGAGCCTTCAAAGCCGTTGCCTAATGGTGGAGATTTGAATTTGGGAGAGTTGCTCAAGTACAAGTCACAAGAAGGGGTGCGAGTCTTGTTATTGGTTTGGGATGACAAGACTTCCCACAGCAAGTTCTTCATTAATACGACTGGAGTGATGCAGACTCATGATGAGGAGACCCGGAAGTTTTTCAAGCACTCTTCTGTGTCATGTGTTTTGTCACCCCGATATGCCAGCAGTAAGCTTAGCATTTTTAAGCAACAGGCACGCTTTATACCATGGTTAAGTTACATGTTGGTCGTTGGAACGCTTTTCACCCATCACCAGAAGTGTGTGATTGTGGATACACAAGCATCTGGAAATTATCGGAAGATAACTTCTTTTATTGGAGGACTTGACCTTTGCGATGGCCGTTACGATACTCCTGAGCACCGGTTGTTAAAAGATCTTGACACTGGAGGTACAAGGGGTCCTCGGCAGCCATGGCATGATTTACATTGCAAAATTGAAGGACCTGCCGCATATGATGTGCTTACTAACTTTGAACAACGATGGCGAAAAGCCACAAAATGGTCTGAATTGGGTCAGCGATTCAAAAGAGTATCACATTGGCATGAAGATGCTTTAATAAAGTTGGAACGCATATCTTGGATACTTAGTCCATCTCAATCAGTCCCCAACGATGATCCTTTGTTATGGGTTTCCAAAGAAAATGATCCTGGCAACTGGCATGTTCAGGTTTTCCGATCCATAGATTCAGGATCTTTGAAAGGATTTCCCAAAGATGTTTTTCAAGCTGAGTTGCAGAATCTGGTTTGTGCAAAAAATTTGGTTATTGATAAAAGCATTCAAACAGCATATGTTCAAGCAATAAGATCCGCCCAACACTTCATATACATTGAGAATCAGTATTTTCTTGGATCATCCTTTGCATGGCCTTCGTACAAAGAAGCAGGTGCTGATAATCTTATTCCTATGGAGTTGGCGTTGAAGATTGCTAGTAAGATAAGAGCCAATGAGAGGTTTGCTGTCTACGTTGTGATACCAATGTGGCCTGAAGGGGCTCCCTCTTCTGTTTCTGTGCAAGAAATCCTGTTTTGGCAGGGTCAGACAATTCAAATGATGTACGAAGTCATTGGACGAGAGTTGAAATATAAGAATCTCGAGAACGCTCATCCCTCAGACTACTTAAACTTCTACTGTCTTGGCAATAGGGAATCACACGACGACTTGACATGTTCCTCTGGTCATTCCTCCAAGAGTGAAGATTTGGTTTCAGACTCGCAAAAATTCCGTAGATTCATGATATATGTGCATGCGAAAGGAATGATTGTTGATGATGAGTACGTAATAGTAGGGTCAGCAAATATAAATCAAAGATCAATGGCTGGATCAAGGGACACTGAGATTGCCATGGGTGCATATCAACCCAGTTACACATGGGGGAAGATGAAACGACATCCACGAGGCCAGGTTTATGGCTACAGAATGTCGCTCTGGGCAGAACATTTGGGAAACATTGACGATTGCTTCAAGGAGCCAGAAAGTTTACCTTGTGTGAAGGCAGTCAACAAGATAGCTGAAGATAACTGGAAGAAATACACGGCGACGGAGTATGCGCCATTGCAAGGGCACCTCCTGAAGTACCCGATTGAGGTCAGCCAAAGTGGGAAGATAGGTCCGTTGACTGGACACGAGACTTTCCCTGACTTCGGTGGTAAGGTCCTTGGAGCTCGATCTAACCTCCCTGATGCTCTTACAACGTAA 2544 44.85 MMNGHDAEPLVYVHGDLDLKIIEARHLPNMDLLTERIRRFFTVFSSCRKPFSKKKDKEDHQHHRKIITSDPYVTVCLAGATVARTRVISNSQNPIWNEHFNIPLAHPVSQVEFHVKDNDVFGADLIGIATVPARRVLSGETIDDWFPIIGTFGKPPKPDSAVRLEMKFTKCEDNPLYRYGIAADPEHFGVRNCYFPVRHGGSVTLYQDAHVPESMLEKIELEKGNLYQHENCWEDICHAILEAHHLVYIAGWSIYHKVKLVREPSKPLPNGGDLNLGELLKYKSQEGVRVLLLVWDDKTSHSKFFINTTGVMQTHDEETRKFFKHSSVSCVLSPRYASSKLSIFKQQARFIPWLSYMLVVGTLFTHHQKCVIVDTQASGNYRKITSFIGGLDLCDGRYDTPEHRLLKDLDTGGTRGPRQPWHDLHCKIEGPAAYDVLTNFEQRWRKATKWSELGQRFKRVSHWHEDALIKLERISWILSPSQSVPNDDPLLWVSKENDPGNWHVQVFRSIDSGSLKGFPKDVFQAELQNLVCAKNLVIDKSIQTAYVQAIRSAQHFIYIENQYFLGSSFAWPSYKEAGADNLIPMELALKIASKIRANERFAVYVVIPMWPEGAPSSVSVQEILFWQGQTIQMMYEVIGRELKYKNLENAHPSDYLNFYCLGNRESHDDLTCSSGHSSKSEDLVSDSQKFRRFMIYVHAKGMIVDDEYVIVGSANINQRSMAGSRDTEIAMGAYQPSYTWGKMKRHPRGQVYGYRMSLWAEHLGNIDDCFKEPESLPCVKAVNKIAEDNWKKYTATEYAPLQGHLLKYPIEVSQSGKIGPLTGHETFPDFGGKVLGARSNLPDALTT 847
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 24525324 24531433 + MELO3C011336.2.1 Cme03g01540 323551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01540 847 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 14 170 IPR035892 -
Cme03g01540 847 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 362 397 IPR001736 GO:0003824
Cme03g01540 847 Pfam Phospholipase D Active site motif 363 397 IPR001736 GO:0003824
Cme03g01540 847 Pfam Phospholipase D Active site motif 694 720 IPR001736 GO:0003824
Cme03g01540 847 Gene3D Endonuclease Chain A 216 468 - -
Cme03g01540 847 SUPERFAMILY Phospholipase D/nuclease 227 456 - -
Cme03g01540 847 SMART C2_3c 16 145 IPR000008 -
Cme03g01540 847 Gene3D C2 domain 13 176 IPR035892 -
Cme03g01540 847 CDD C2_plant_PLD 11 169 - -
Cme03g01540 847 Gene3D Endonuclease Chain A 521 739 - -
Cme03g01540 847 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 693 720 IPR001736 GO:0003824
Cme03g01540 847 PANTHER PHOSPHOLIPASE D 9 846 - -
Cme03g01540 847 Pfam C2 domain 15 148 IPR000008 -
Cme03g01540 847 PIRSF PLD_plant 2 847 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Cme03g01540 847 Pfam Phospholipase D C terminal 767 837 IPR024632 -
Cme03g01540 847 SMART pld_4 693 720 IPR001736 GO:0003824
Cme03g01540 847 SMART pld_4 362 397 IPR001736 GO:0003824
Cme03g01540 847 ProSiteProfiles C2 domain profile. 1 146 IPR000008 -
Cme03g01540 847 PANTHER PHOSPHOLIPASE D 9 846 IPR015679 -
Cme03g01540 847 SUPERFAMILY Phospholipase D/nuclease 539 778 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01540 Cme-Chr3:24525324 Cme08g00969 Cme-Chr8:6372261 0 dispersed
Cme03g01540 Cme-Chr3:24525324 Cme03g01617 Cme-Chr3:25062581 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01540 K01115 - csv:101213442 1679.07