Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01542 AGATTAGTACGTAATTCAAAATCAAACTTTATAGAGAAAAGAGATAAGGTTGACGGTGAAAATCCGCGCATAGTCCATTTGCTTCCGTTTCTCTTTGTTTCCATACCAACCCAACCAAATCCAATGGCTACGCCGGTGAAAGTGTACGGACCACCGTTGTCCACCGCCGTCTCCAGAGTACTTGCCTGTCTTCTCGAGAAGGACGTCCAGTTTCAGCTCTTACCGGTGAACATGGCGAAAGGAGAACACAAGAGCCCGGAATATCTCAAGATTCAGCCATTCGGTCAAGTCCCTGCATTCCAAGACGAAAGCATCTCCCTCTTCGAATCTAGAGCAATCTGCCGCTACATTTGCGAGAAACACGCGGAGAAGGGGAATAAAGGACTGTACGGACTGGATCAGTTAGGGAAAGCTTCGATCGAACAATGGATTGAAGCGGAGGGGCAGAACTTCAATCCCGCGAGCTCGATTCTTGTTTTTCAACTGGCGTTTGCGCCGAGGATGAAGTTGCCGCAGGATGAGAAGGCGATTAAGCAAAACGAGGAGAAGCTGTCGAAGGTGCTTGATGTGTACGAGCAGAGACTGGGAGAGAGTCGATATTTGGCCGGAGATGAGTTCTCGTTGGCTGATCTTTCTCATTTGCCTAACGGGCATTATCTGGTGAATAATGCGGACAGGGCGGAGCTTTTCACGTCGAGGAAGAACGTGGAGCGGTGGTGGAATGAAATATCCAGCAGGGAATCTTGGAAGGAGGTGGTTGAATTGCAGAACAAGGCATCTTCTTGA 786 48.85 RLVRNSKSNFIEKRDKVDGENPRIVHLLPFLFVSIPTQPNPMATPVKVYGPPLSTAVSRVLACLLEKDVQFQLLPVNMAKGEHKSPEYLKIQPFGQVPAFQDESISLFESRAICRYICEKHAEKGNKGLYGLDQLGKASIEQWIEAEGQNFNPASSILVFQLAFAPRMKLPQDEKAIKQNEEKLSKVLDVYEQRLGESRYLAGDEFSLADLSHLPNGHYLVNNADRAELFTSRKNVERWWNEISSRESWKEVVELQNKASS 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 24540781 24541756 + MELO3C011334.2.1 Cme03g01542 323553

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01542 261 CDD GST_C_Phi 137 253 IPR034347 -
Cme03g01542 261 Pfam Glutathione S-transferase, N-terminal domain 45 117 IPR004045 -
Cme03g01542 261 SUPERFAMILY Thioredoxin-like 44 125 IPR036249 -
Cme03g01542 261 Gene3D Glutaredoxin 43 131 - -
Cme03g01542 261 SFLD Main.5: Phi-like 45 256 - -
Cme03g01542 261 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 44 125 IPR004045 -
Cme03g01542 261 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 133 261 IPR010987 -
Cme03g01542 261 CDD GST_N_Phi 45 120 - -
Cme03g01542 261 SUPERFAMILY GST C-terminal domain-like 126 254 IPR036282 -
Cme03g01542 261 PANTHER GLUTATHIONE S-TRANSFERASE RHO 45 257 - -
Cme03g01542 261 Pfam Glutathione S-transferase, C-terminal domain 162 247 IPR004046 -
Cme03g01542 261 Gene3D - 133 253 - -
Cme03g01542 261 SFLD Main (cytGST) 45 256 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01542 K00799 GST, gst; glutathione S-transferase [EC:2.5.1.18] - csv:101213523 426.402
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02341 Cme-Chr1:31751251 Cme03g01542 Cme-Chr3:24540781 5.68E-63 dispersed
Cme01g02342 Cme-Chr1:31757729 Cme03g01542 Cme-Chr3:24540781 1.70E-58 dispersed
Cme03g01542 Cme-Chr3:24540781 Cme07g00806 Cme-Chr7:7604871 2.88E-13 dispersed
Cme07g01625 Cme-Chr7:22024841 Cme03g01542 Cme-Chr3:24540781 8.68E-11 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g151 . . . . . . . . . . . . . . . . . Bhi04g00084 . . . . . . Cla08g01393 Cam08g1867 Cec08g1446 Cco08g1579 Clacu08g1561 . Cre08g1345 . . . Cone20ag0053 . . . Cme03g01542 . . Bda08g01187 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01285 . Chy03g01050 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005856 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 0 1 1 1 1 5 38