Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01544 ATGGTATTTTCGTCTCCATGTTGCTCTTTGTTTCTGTTTCCTACCAAAATCTCAATCCCCCTTCGCCGGGATTCTTCAATTCTCTACAATTTCTTCATCCAGTCAAGAACCCAATACCCACTTCTTCTTCTTCTTCGCTCATTTCACCTGATCCGTCCATGTGCAGCATCAGAGGCGCTTGTTTCAGATTTACTGATCGCTGTTAAATCTTGCACTTCCATCTCCAATTGCCGGGAAATTCATGCCCGAGTATTCAAATCTTTGCTTTATAGAGATGGGTTCATTGGGGATCAGCTGGTTACTTGTTATAATAAACTGGGCTATGCTGAAGATGCACAGAAGCTGTTTGACGATATGCCTCATAAAGATTTGGTTTCTTGGAACTCACTGATTTCTGGTTTTTCTCGGTGTCTTCATATGACTCTCACAGCATTTTATACCATGAAGTTTGAGATGTCAATTAAACCCAATGAGGTCACAATTTTGTCGATGATATCAGCTTGCAATGGAGCTTTGGATGCAGGGAAGTATATTCATGGTTTTGCAATTAAAGTTGGTGGTACTTTGGAGGTTAAGGTTGCTAATTCTCTCATTAACATGTATGGAAAGTCTGGAGACTTAACATCAGCTTGTAGATTATTTGAGGCCATTCCAGACCCGAATACAGTGTCGTGGAATTCAATAATTGCTGCTCAAGTTACTAATGGCTGTGCACGAGAAGGAATTGATTTTTTTAATAAGATGAGAAGGTTTGGAATTGAGCAGGATGAAGGAACTATCCTGGCCCTGCTTCAAGCTTGCCTACATTTGGGTGTAGGAAAATTGGCAGAAAGCATTCATGCTTTAATGTTCTGCACTGGTTTTGGCGCAAAAATCACCATAGCAACTGCACTTTTAGATACCTATGCGAAATTGGGAAGATTAAGTGCTTCATGTGACGTCTTTAGGGAGGTGGGTTTTGCAGACAGAGTTGCTTGGACTGCCATGCTTGCAGGATATGCTGCACATGGATTAGGTAGGGAAGCAATCAAGCTTTTCGAGAGCATGGTCAATGAAGGTTTGGAGCCTGATCATGTGACTTTTACTCATTTGCTTAGCGCATGTAGTCATTCAGGGCTAGTCAACGAGGGGAAAAGTTACTTCAATGTGATGTCTGAAGTGTATGGAATTGAGCCCAGGGTAGATCATTATTCATGTATGGTTGATCTACTCGGTCGCTGCGGACTTTTGAATGATGCTTATGAGGTGATACGAAACATGCCCATGGAGCCTAATGCTGGTGTGTGGGGTGCGCTTCTCGGTGCTTGTAGGGTTCATGGTAACGTTGAACTTGGTAAGGAAGTTGCAGAGCATTTGATTAATTTGGAACCTTTGGACCCCAGAAACTATATCATGTTATCAAATATATATTCCGCATCTCGTTCTTGGAAGGATGCTGCCAAAATGAGGGCCTTGCTAAAGGAGAGAGGTCTGAAAAGAACCCCAGGATGTAGCTCCATTGAATATGGAAACAAGAACCACCACTTCTTCGTGGGCGATCGATCTCACCCTGAGACGGAGAAGATCTATTCCAAGCTTGAAGAATTGCTCGGAAAAATAAAGAAAGCTGGATATAGTTCCAAAACAGAATATGTTCTGCAAGACGTTGAAGAGGAAGTCAAGGAGGATATGATAAACAAGCACAGCGAGAAGTTAGCCATTGCTTTTGGGCTTTTGGTGAGTAAAGAAGGTGAACCTTTAATCATAACAAAGAATCTTAGAATTTGTGGAGATTGTCACAGCACTGCAAAGCTCATATCATTGATTGAGAAGCGTACCATTATTATCCGGGATCCAAAACGCTTTCACCATTTCTCTGATGGATTCTGTTCTTGTGCAGATTACTGGTAA 1890 41.9 MVFSSPCCSLFLFPTKISIPLRRDSSILYNFFIQSRTQYPLLLLLRSFHLIRPCAASEALVSDLLIAVKSCTSISNCREIHARVFKSLLYRDGFIGDQLVTCYNKLGYAEDAQKLFDDMPHKDLVSWNSLISGFSRCLHMTLTAFYTMKFEMSIKPNEVTILSMISACNGALDAGKYIHGFAIKVGGTLEVKVANSLINMYGKSGDLTSACRLFEAIPDPNTVSWNSIIAAQVTNGCAREGIDFFNKMRRFGIEQDEGTILALLQACLHLGVGKLAESIHALMFCTGFGAKITIATALLDTYAKLGRLSASCDVFREVGFADRVAWTAMLAGYAAHGLGREAIKLFESMVNEGLEPDHVTFTHLLSACSHSGLVNEGKSYFNVMSEVYGIEPRVDHYSCMVDLLGRCGLLNDAYEVIRNMPMEPNAGVWGALLGACRVHGNVELGKEVAEHLINLEPLDPRNYIMLSNIYSASRSWKDAAKMRALLKERGLKRTPGCSSIEYGNKNHHFFVGDRSHPETEKIYSKLEELLGKIKKAGYSSKTEYVLQDVEEEVKEDMINKHSEKLAIAFGLLVSKEGEPLIITKNLRICGDCHSTAKLISLIEKRTIIIRDPKRFHHFSDGFCSCADYW 629
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 24542021 24547535 + MELO3C011333.2.1 Cme03g01544 323555

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01544 629 Gene3D Tetratricopeptide repeat domain 181 283 IPR011990 GO:0005515
Cme03g01544 629 Gene3D Tetratricopeptide repeat domain 54 177 IPR011990 GO:0005515
Cme03g01544 629 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 221 255 IPR002885 -
Cme03g01544 629 Gene3D Tetratricopeptide repeat domain 294 521 IPR011990 GO:0005515
Cme03g01544 629 Pfam PPR repeat 125 137 IPR002885 -
Cme03g01544 629 Pfam PPR repeat 99 122 IPR002885 -
Cme03g01544 629 Pfam PPR repeat 396 421 IPR002885 -
Cme03g01544 629 Pfam PPR repeat 195 215 IPR002885 -
Cme03g01544 629 Pfam PPR repeat family 220 267 IPR002885 -
Cme03g01544 629 Pfam PPR repeat family 322 369 IPR002885 -
Cme03g01544 629 Pfam E+ motif 507 533 IPR046849 -
Cme03g01544 629 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 322 356 IPR002885 -
Cme03g01544 629 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 36 615 - -
Cme03g01544 629 Pfam DYW family of nucleic acid deaminases 537 629 IPR032867 GO:0008270
Cme03g01544 629 Pfam E motif 439 501 IPR046848 -
Cme03g01544 629 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 36 615 - -
Cme03g01544 629 TIGRFAM PPR: pentatricopeptide repeat domain 223 256 IPR002885 -
Cme03g01544 629 TIGRFAM PPR: pentatricopeptide repeat domain 324 357 IPR002885 -
Cme03g01544 629 TIGRFAM PPR: pentatricopeptide repeat domain 359 392 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01544 - - - csv:101213281 1194.49
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01544 Cme-Chr3:24542021 Cme02g01246 Cme-Chr2:17991713 4.68E-28 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g147 . . . . . . . . Cmo05g00332 . . . . . . . . Bhi04g00085 . . . . . . Cla08g01392 . . . . . . . . . Cone20ag0051 . . . Cme03g01544 . . Bda08g01186 . Bpe02g01681 Bpe05g00164 . . . . . . Cma05g00329 Car05g00276 . . . . . . . . . . . . . . . . . Lsi08g01284 . Chy03g01051 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012454 1 1 0 2 1 1 1 1 1 1 1 1 1 1 0 1 1 1 0 1 1 0 2 0 0 1 1 0 0 1 24