Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01545 ATGAGTCTTTATCTTCTTCCTCCTCAGCATCGCTCCTTTTTCGATTTGCTTTTGCGGTATACTCGTCAGAAAGATCTTCAGAAGGGCAAAGCCATTCACGCTCAACTCCTCAGAACTGGTTCTTGCTGTTCAGTCTACCTCACCAACAGTCTTGTTAACTTGTATGCCAAATGTGGAAGCCTTCTCAAGGCCAAGCTCGTCTTCGAGAGTATATCAAACAAAGACGTTGTCTCATGGAATTGCCTCATCAATGGCTACTCTCAAAAGGGTACCGTTGGATCTTCGTTTGTGATGGAGCTTTTTCAGAGAATGAGAGCGGAGAACACTCTGCCGAATGCCCATACTTTTAGCGGGGTTTTCACTGCTGCTTCAAGTTCACCCGAAACTTTTGGTGGTCTACAGGCCCATGCGCTTGCGATCAAGACTTCTAACTTTTATGATGTTTTTGTTGGCAGTTCGCTTATTAATATGTATTGTAAAATTGGGTGTCTGCTCGATGCTCGTAAGGTGTTCGACACAATTCCCGAGAGGAATATTGTTTCTTGGGCTACAATGATTTCAGGGTATGCGATGGAAAGGATGGCTCTTGAGGCTTGGGAGTTGTTTTTATTGATGCGTCGTGAAGAGGGGGCCCATGATAAGTTTATCTATACGGGTGTGCTTAGTGCACTGACGGTTCCTGATCTTGTTCGCTATGTTGATGCTCGAAAGGGGTTTGATTATTTAAAAGAACCGGATATTGTTTTGTGGACTTCCATGATTTCAGGATATGCTCAAAATGGTGAAAATGAAACTGCTTTGACTCTATATTGTAGAATGCAGATGGAAGGGATTCTGCCCCATGAGCTAACTATGGCTAGTGTCTTGAGAGCATGTTCAAGCCTTGCTGCTTTAGAACAAGGTAAGCAAATCCATGCCCAGACGATTAAATATGGATTCAGTCTTGAAGTTCCAATAGGGAGTGCCCTTTCTACCATGTATGCAAAGTGTGGTAGTGTAGAAGATGGGAACCTGGTATTTAGGAGGATGCCTACTCGAGATATTATGACATGGAATGCTATGATATCTGGTCTTTCTCAAAATGGAGAGGGTCTTAAGGCTCTTGAACTTTTTGAAGAGATGCGTCACGGCACTACAAAACCCGACTATGTTACTTTCGTGAACGTTCTTTCTGCGTGTAGTCACATGGGATTGGTGGAAAGAGGCAAGGTATATTTTAGGATGATGCTTGATGATTTCGGCATTGTTCCAAGAGTCGAGCATTATGCTTGCATGGTAGATATTCTAAGTCGTGCAGGTAAGCTACATGAAACGAAAGAGTTCATAGAATCTGCCACTATCGATCACGGTATGTGTTTATGGCGTATCCTGTTAGGTGCTTGTCGAAACTATCGTAATTACGAATTGGGAGCATATGCAGGGGAGAAACTAATGGAGTTAGGTTCACAAGAATCGTCTGCTTATATATTATTATCTAGTATTTATACTGCACTGGGAAGGTCTGATGATGTTGAACGGGTGAGAAGGTTGATGAAACTTCGAGGGGTGAATAAGGAACCAGGTTGTAGTTGGATTGAATTGAAAAGTCAGGTTCATGTGTTTGTAGTTGGCGACCAGATACATCCTCAGATTTTCAAAATACGTTCAGAGTTAAGAAGGTTGAGAGATCATATGAAGGATGAATGTTATGAATCATTCGATGATACAAACTCTATGACATTATACATATAG 1731 42.06 MSLYLLPPQHRSFFDLLLRYTRQKDLQKGKAIHAQLLRTGSCCSVYLTNSLVNLYAKCGSLLKAKLVFESISNKDVVSWNCLINGYSQKGTVGSSFVMELFQRMRAENTLPNAHTFSGVFTAASSSPETFGGLQAHALAIKTSNFYDVFVGSSLINMYCKIGCLLDARKVFDTIPERNIVSWATMISGYAMERMALEAWELFLLMRREEGAHDKFIYTGVLSALTVPDLVRYVDARKGFDYLKEPDIVLWTSMISGYAQNGENETALTLYCRMQMEGILPHELTMASVLRACSSLAALEQGKQIHAQTIKYGFSLEVPIGSALSTMYAKCGSVEDGNLVFRRMPTRDIMTWNAMISGLSQNGEGLKALELFEEMRHGTTKPDYVTFVNVLSACSHMGLVERGKVYFRMMLDDFGIVPRVEHYACMVDILSRAGKLHETKEFIESATIDHGMCLWRILLGACRNYRNYELGAYAGEKLMELGSQESSAYILLSSIYTALGRSDDVERVRRLMKLRGVNKEPGCSWIELKSQVHVFVVGDQIHPQIFKIRSELRRLRDHMKDECYESFDDTNSMTLYI 576
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 24546172 24550339 - MELO3C011331.2.1 Cme03g01545 323556

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01545 576 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 347 381 IPR002885 -
Cme03g01545 576 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 233 563 - -
Cme03g01545 576 Pfam E motif 464 526 IPR046848 -
Cme03g01545 576 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 75 111 IPR002885 -
Cme03g01545 576 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 246 280 IPR002885 -
Cme03g01545 576 Gene3D Tetratricopeptide repeat domain 231 346 IPR011990 GO:0005515
Cme03g01545 576 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 178 208 IPR002885 -
Cme03g01545 576 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 132 223 - -
Cme03g01545 576 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 26 125 - -
Cme03g01545 576 Pfam PPR repeat family 245 293 IPR002885 -
Cme03g01545 576 Pfam PPR repeat family 74 122 IPR002885 -
Cme03g01545 576 Pfam PPR repeat family 347 394 IPR002885 -
Cme03g01545 576 Gene3D Tetratricopeptide repeat domain 135 230 IPR011990 GO:0005515
Cme03g01545 576 Gene3D Tetratricopeptide repeat domain 6 131 IPR011990 GO:0005515
Cme03g01545 576 Gene3D Tetratricopeptide repeat domain 347 543 IPR011990 GO:0005515
Cme03g01545 576 Pfam PPR repeat 152 179 IPR002885 -
Cme03g01545 576 Pfam PPR repeat 180 208 IPR002885 -
Cme03g01545 576 Pfam PPR repeat 49 73 IPR002885 -
Cme03g01545 576 TIGRFAM PPR: pentatricopeptide repeat domain 180 208 IPR002885 -
Cme03g01545 576 TIGRFAM PPR: pentatricopeptide repeat domain 248 280 IPR002885 -
Cme03g01545 576 TIGRFAM PPR: pentatricopeptide repeat domain 350 376 IPR002885 -
Cme03g01545 576 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 132 223 - -
Cme03g01545 576 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 233 563 - -
Cme03g01545 576 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 26 125 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01545 - - - csv:101213039 769.615
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01545 Cme-Chr3:24546172 Cme01g02080 Cme-Chr1:29650532 1.44E-13 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g143 . . . . . . . . . . . . . . . . . Bhi04g00088 . . . . . . Cla08g01390 . . . . . . . . . . . . . Cme03g01545 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01280 . Chy03g01053 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012001 0 2 0 1 1 1 1 1 1 1 1 1 1 1 0 1 1 0 1 1 1 1 1 0 2 1 1 0 0 1 25