Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01549 ATGGAGGAAGCCGGTCCCAAACCCAAGAGGCCCGTCTCGTCCCTTTGTTGTTTATGCAACAACAGGAAAGCTGCTCTCAAGAGGCCCAAAACCCTCCAACAGATATGCAGAGAATGTTTCTATGAGGTCTTTGAGGAGGAGATTCATCAAGTTATTGTGAAGAATCAGTTGTTCAGACCTGGGGAACGCATTGCTGTTGGTGCATCTGGTGGAAAAGATTCTACCGTTCTTGCTTATGTGTTATCAGAACTGAATCAGCGGCACAATTATGGTTTAGATCTCTTTCTTTTATCAGTTGATGAGGGCATCACTGGATACAGAGATGACTCCCTTGAAACTGTGAAAAGAAATGAAATTCAGTATGGATTGCCACTACAAATTGTATCATACAAGGATTTATATGGATGGACAATGGACGAGATAGTGAAAATGATCGGTTTGAAGAATAATTGCACCTTTTGTGGAGTTTTCCGTCGACAGGCTCTTGATAGAGGTGCTGCATGGTTGAAAGTAGACAAGCTTGCCACAGGGCACAATGCAGATGATATGGCTGAAACAGTTCTATTAAATATATTACGAGGTGATATTGCAAGATTGAGTAGATGTACTGCAATAATTACCGGTGAAGATGGACCAATTCCAAGATGCAAACCTTTCAAATACACATATGAAAAGGAGATCGTAATGTATGCTTACTTTAAGAAGCTGGACTACTTCTCCACCGAGTGCATTTATTCTCCCAATGCTTATCGTGGTTTTGCTCGTGAATTTATTAAGGATTTGGAACGAATCAGACCTAGGGCCATTCTTGACATCATTAAATCTGGCGAGGATTTCAGGATTTCCACTTCAACAAAAATGCCTGAGCAAGGGACGTGTGAACGATGTGGCTACATTTCAAGCCAGAAATGGTGTAAAGCTTGTGTTCTGCTCGAGGGCCTAAACCGAGGTTTACCAAAGCTGGGTATTGGGCGCAGTCGGGGGCTTGATAGCGAGGGGAAGAAGGAAACCATTGGAAGTAATAATGTACATACGAGAAGCATTGAGAGCAAACAATGTGGCTCTTTAGATTTCTGA 1077 42.34 MEEAGPKPKRPVSSLCCLCNNRKAALKRPKTLQQICRECFYEVFEEEIHQVIVKNQLFRPGERIAVGASGGKDSTVLAYVLSELNQRHNYGLDLFLLSVDEGITGYRDDSLETVKRNEIQYGLPLQIVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQALDRGAAWLKVDKLATGHNADDMAETVLLNILRGDIARLSRCTAIITGEDGPIPRCKPFKYTYEKEIVMYAYFKKLDYFSTECIYSPNAYRGFAREFIKDLERIRPRAILDIIKSGEDFRISTSTKMPEQGTCERCGYISSQKWCKACVLLEGLNRGLPKLGIGRSRGLDSEGKKETIGSNNVHTRSIESKQCGSLDF 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 24584913 24589222 - MELO3C011328.2.1 Cme03g01549 323560

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01549 358 CDD Alpha_ANH_like_II 63 249 - -
Cme03g01549 358 PANTHER CYTOPLASMIC TRNA 2-THIOLATION PROTEIN 1 15 338 IPR000541 GO:0000049|GO:0002098|GO:0034227
Cme03g01549 358 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 49 279 - -
Cme03g01549 358 Pfam Zinc-ribbon 291 321 IPR032442 -
Cme03g01549 358 PANTHER ATPASES OF THE PP SUPERFAMILY-RELATED 15 338 - -
Cme03g01549 358 Hamap Cytoplasmic tRNA 2-thiolation protein 1 [CTU1]. 14 326 IPR000541 GO:0000049|GO:0002098|GO:0034227
Cme03g01549 358 Pfam PP-loop family 64 251 IPR011063 -
Cme03g01549 358 TIGRFAM TIGR00269: TIGR00269 family protein 213 313 IPR000541 GO:0000049|GO:0002098|GO:0034227
Cme03g01549 358 Gene3D HUPs 15 331 IPR014729 -
Cme03g01549 358 PIRSF ATPase_YdaO 12 323 IPR035107 GO:0008033
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01549 K14168 CTU1, NCS6; cytoplasmic tRNA 2-thiolation protein 1 [EC:2.7.7.-] - csv:101212318 722.235
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01549 Cme-Chr3:24584913 Cme12g00575 Cme-Chr12:10175726 2.99E-37 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g135 . . . . Bpe02g00324 . . Bma01g02099 . . . . . . . . . Bhi04g00091 . . . . . . Cla08g01387 Cam08g1860 Cec08g1439 Cco08g1571 Clacu08g1554 . Cre08g1338 . . . . . . . Cme03g01549 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01277 . Chy03g00560 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013567 0 1 0 0 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 0 1 1 1 0 1 1 1 1 1 24