Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01550 ATGCAAGCCAACTTCATGATCGACATTGGAGACAAAGCCGAAGTTCCCATCATCTCATTTTCAGCCACACGACCTTCCCTCACTTCTCACCGCAGCTCTTTCTTCTTCCGAGCCGCTCAAAACGATTCGTCTCAAGTCAAAGCCATTGGAGCTATAGTTAAGACCTTCAAATGGCGACAAGTCGTCCCCATTTATAGCGACAATGAGTTCGGCGACGGTATCATCCCTGACCTAATCGACGCTCTACAAGAAGTCGACACTGACGTGCCATACCAAAGCAAAATTTCCCCCACCGCAACCGACGAGCAAATCAGCCTCGAACTTTACAAGTTAATGACAATGCAAACGAGAGTATTCGTAGTACACATGCTAGCCCGTGATGCTTCTCGACTTTTCGCAAAGGCAAAAGAGATTGGAATGATGAAAGAAGGGTACGTTTGGATAATCACAGATGCTATAGCAAATCCATTGGATTTAATAGAGCCTTCAATATTGGAGTCCATGCAAGGAGTTTTAGGAATAAGAACTCACGTCCCCAAATCCAAAAGGCTTGAGTATTTTAAACTTGAATGGCGTAAGAGATTTCGAAGATATTATCCAACAATAGAAGATATTCCTGAGTTGAACGTGTTTGGGTTATGGGCTTACGATGCAGCTTGGGCATTGGCCGAAGCAGTGGAGAAGGCTGGAACAGATAACCTCAAATACAAGCCAGCCATAAACATACCAGCCATGGAAATGAACTCATCAAACTATTTATACAGTCTAGGAGTGAATGAAAATGGTGTAAAATTGAGAGATGCATTATCAAAGGTGAGTTTCAAAGGGTTAGCTGGTATGTTCGATTTGATAAATGGGGAATTGGAATCATCTGTTTTTGAGATAGTGAATTTGGTGGATAATGGAAGAAGAAATGTTGGGTTTTGGTCAGTAGAAAGTGGGTTAAGGAGGAAATTAAAAGATCAGCTGGACGGTTCAAGATCAAGATCAACAAGTGGATTGAGAACCATAATTTGGCCAGGAGAAGCAGATTTTACTCCAAAAGGATGGGAAATTCCAACAAATGGGAAAAAATTGAGAGTTGGAGTTCCAATAAGGAGTGGATTTTTTGAGTTCGTGAAAGTGGGGTTCGATCCTAAAACAAATGAAACGAAAGTGAGTGGTTATTGTATTGATGTGTTTAAGGCTGTGATTGAAGCTTTGCACTATCATGTTGCTTATGAATTCGTTCCAGTTAGCATTGCCAATTCATATATAGGTTCCAGCTATAATAGCTTGGCTTATCGACTCTTCCTTGGGGAGTTCGACGCTGTGGTAGCTGACTTAACGATCCGTGCAAATAGGTCATTATACATAGATTACACATTACCATATACAGAATCTGGTGTGACAATGGTTGTGCCAATGAAGAGCACGAGGAATAAAAATGCATGGGAGTTCATAAGACCTCTAACAGGTCAAATGTGGGCTCTAACTGGCGGTTTCTTCCTTGTCATCGCACTTGTTGTTTGGATTCTTGAACATCGAATCAATGAAGAGTTTGATGGAAGTGCTTTGGATCAGCTCTGTACGAGTCTTTGGTACTCTTTCTCCACCATGGTTTTTGCCCATAGGGATGTTACATTCAACAACTGGACCAGAGTTGTGGTGATAATATGGCTGTTTATAGTTCTAGTCATTACACAAAGTTACACTGCAAGTTTAGCTTCACTTTTGACGGTTCAAGAACTCAAACCAGCCGTAACTGATATCAATCAGCTTCTTAAAAATGGAGAGAACATAGGGCTTCAAGGGGGTTCTTTCATCTATGAGATTCTCAAGTCCTTGAAGTTCAATGATATCCAGCTCAAAACTTACAGCAGTGTAGAACAAATGCACGAACTTTTCACAAAAGGAAGCATGAATGGAGGAATTTCTGCTGCCTTAGATGAAATCCCTTACATTAACCTATTTCTCGCAAAGTATTGCTCACAATATACCACCACTGAACCCACCTATAAAGCCGAAGGTTTTGGTTTTGGTTTTCCAATAGGTTCGCCCTTAGTACCTGATATCTCGAGAGCAATCTTGCAAGTGACAGAAAGTGATAGAATGAGAGAGATCGAGAACGCTTGGTTTCAGAAGCCGATGGACTGTTCAGCATCGAAAGCTTCGGAGCTTTCTTCAAGTCGACTCAGCCCCATCAGCTTCTGGGGACTTTTTATGATCATCAGCGTTGTTTCTTTTGTTTCTTGCATCTCTTACATTGGCAAATTTCTGTACGACGAACGATTGGTGTGGTTAAACGTAAATCATACCATCTGGGCTAGAATTTCTCGCTTGTTTCTAATGTTTATGGGGAGAGACTTGAGAGCTCACCCGTTGCGGAGGAGGAGAAGATTCATAGATAATGCCAATCCTGTTCTTCGAAGAAACCGTAGTTTTTAG 2427 41.53 MQANFMIDIGDKAEVPIISFSATRPSLTSHRSSFFFRAAQNDSSQVKAIGAIVKTFKWRQVVPIYSDNEFGDGIIPDLIDALQEVDTDVPYQSKISPTATDEQISLELYKLMTMQTRVFVVHMLARDASRLFAKAKEIGMMKEGYVWIITDAIANPLDLIEPSILESMQGVLGIRTHVPKSKRLEYFKLEWRKRFRRYYPTIEDIPELNVFGLWAYDAAWALAEAVEKAGTDNLKYKPAINIPAMEMNSSNYLYSLGVNENGVKLRDALSKVSFKGLAGMFDLINGELESSVFEIVNLVDNGRRNVGFWSVESGLRRKLKDQLDGSRSRSTSGLRTIIWPGEADFTPKGWEIPTNGKKLRVGVPIRSGFFEFVKVGFDPKTNETKVSGYCIDVFKAVIEALHYHVAYEFVPVSIANSYIGSSYNSLAYRLFLGEFDAVVADLTIRANRSLYIDYTLPYTESGVTMVVPMKSTRNKNAWEFIRPLTGQMWALTGGFFLVIALVVWILEHRINEEFDGSALDQLCTSLWYSFSTMVFAHRDVTFNNWTRVVVIIWLFIVLVITQSYTASLASLLTVQELKPAVTDINQLLKNGENIGLQGGSFIYEILKSLKFNDIQLKTYSSVEQMHELFTKGSMNGGISAALDEIPYINLFLAKYCSQYTTTEPTYKAEGFGFGFPIGSPLVPDISRAILQVTESDRMREIENAWFQKPMDCSASKASELSSSRLSPISFWGLFMIISVVSFVSCISYIGKFLYDERLVWLNVNHTIWARISRLFLMFMGRDLRAHPLRRRRRFIDNANPVLRRNRSF 808
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 24595657 24601062 + MELO3C011326.2.1 Cme03g01550 323561

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01550 808 Gene3D - 478 613 - -
Cme03g01550 808 SMART GluR_14 358 708 IPR001320 GO:0015276|GO:0016020
Cme03g01550 808 CDD GluR_Plant 357 706 - -
Cme03g01550 808 SUPERFAMILY Periplasmic binding protein-like II 334 708 - -
Cme03g01550 808 Pfam Receptor family ligand binding region 2 300 IPR001828 -
Cme03g01550 808 Gene3D - 358 477 - -
Cme03g01550 808 CDD PBP1_GABAb_receptor_plant 1 319 IPR044440 -
Cme03g01550 808 PANTHER GLUTAMATE RECEPTOR 2.9 1 788 - -
Cme03g01550 808 Pfam Bacterial extracellular solute-binding proteins, family 3 380 707 IPR001638 -
Cme03g01550 808 Gene3D - 43 209 - -
Cme03g01550 808 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 1 788 - -
Cme03g01550 808 Pfam Ligand-gated ion channel 708 739 IPR001320 GO:0015276|GO:0016020
Cme03g01550 808 Gene3D - 242 357 - -
Cme03g01550 808 SUPERFAMILY Periplasmic binding protein-like I 5 341 IPR028082 -
Cme03g01550 808 PIRSF IGluLR_plant 1 802 IPR017103 -
Cme03g01550 808 Gene3D - 653 714 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01550 K05387 GRIP; glutamate receptor, ionotropic, plant - csv:101203305 1381.31
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01550 Cme-Chr3:24595657 Cme03g01552 Cme-Chr3:24614040 0 dispersed
Cme03g01550 Cme-Chr3:24595657 Cme03g01551 Cme-Chr3:24604918 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g633 . . . . . . . . . Cmo12g00333 . . . . Sed11g1121 . . Bhi04g00082 Tan02g2793 Cmetu03g1615 . Hepe10g0196 . Lcy13g1870 . . . . . . . . Cone7ag1636 . . . . . Cme03g01550 . . Bda01g01358 Bda13g01838 . . . Bma02g00574 . . . . Cma12g00381 . . . . . . . . . . . . . . . . . . Lsi08g01270 . . .
Vvi18g89 . . . . . . . . Cmo05g00357 Cmo12g00620 . . . Car12g00661 . . Cpe07g00594 Bhi04g00092 . . . Hepe10g0189 . Lcy13g1876 Cla08g00938 Cam08g1385 Cec08g0966 Cco08g1088 Clacu08g1092 . Cre08g0875 . . Cone17ag1457 Cone20ag0020 . . . Cme03g01550 Blo17g00906 . . . . . . . . . . Cma12g00683 Cma05g00353 Car05g00298 . Cpe11g00783 . . . . . . . . . . . . . . . Lsi08g00780 . Chy03g01060 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000144 7 5 8 3 3 6 2 4 6 9 4 4 7 6 7 9 4 15 6 5 12 6 5 10 9 7 3 6 6 18 202