Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01551 ATGGGCTTGAGTTGTATTTCAATGGCTCTTGCTGATTTCTATTCTTCTCGGAATCGTTACAAAACAAGAGTGATTCTCAACACAATTGATTCCAATGACACAATTGTTGGTGCAGCTGCAGCAGCGTTGGATTTGATAAAGAAAGAGGAAGTACAAAGCATTATAGGTCCAACAAGTTCGATGCAAGCGAGTTTCATGATCGACGTTGGAGACAAAGCACAAGTTCCCATAATCTCATTTTCTGCCACACGACCTTCCCTCACATCCCATCGCAGCCCTTTCTTCTTTCGAATCGCCCAAGCTGATTCCTTTCAAGTGAAAGCCATTGCAGCCATTGTCAAGGCCTTCAAATGGCGAAAAGTTGTCCCAATATACGTTGACAACGAGTTCGGCGACGGTATCATCCCTTACCTTGTCGACGCTCTACAAGAGGTAGATGCGAATGTGCCATACCAAACCCTCATATCTCCTACCGCCACCAACGACGAGATCGAACTCAAACTTTCAAATTTAATGAATTTGCAAACTCGAGTGTTTGTGGTGCACATGTTACCTGACCTTGCTTCAAGACTCTTCACTATGGCAAAAAAGAAGGGAATGATGGGTCGTGGCTTCGCTTGGATAGTAACAGATGCTATCACAAACGAGTTTAATTCGATGGAACCCTCAATTCTTGATCAATCAATGCAAGGAGTTTTGGGAATAAAAACTTATGTCCCAGGAACCAAACGCCTTGAATCCTTCAAACGTGGTTGGCAAAGAAGATTTCTAAGCTACTATCCAACCATAGAAGAAATTCCTGAGCTGAATGTGTTTGGTTTATGGGCTTATGACACAGCTTGGGCAATAGCCACCGCAGTCGAGAAGGCAGGCACCGACAATCTTCGATATAGCAAGCCCAATAATTTGCGAGAAGCGTTATCAAATGTTAGGTTTAGGGGGTTAGCTGGTGAGTTCAGTCTGGTCAATGGCCAATTACAATCGTTCGTTTTCGAGATAGTGAACGTGATCGGTAACGAAAGAAGAAGCGTGGGGTTTTGGACTCCAAAAGCTGGGCTGACAACAAGTCTACGGCACTCAGGGAAAGAAAGCGTGTTGAGACCGATCATATGGCCGGGAGATACCGAGAAGGCGCCAAAAGGGTGGGAGATTCCGACGGGTGAGAAGAAGTTAAGAGTTGGGGTTCCAGTGAAGGATGGATTTTTAGAGTTTGTGAATGTGGTTCGTGATCCAAAAACAAATGCAACCCAAGTGAGTGGTTATTGTATAGATGTTTTTAAGGCTGTGATTGAAGCTTTGCCCTACGCTGTTACTTATGAATTCATTCCTAACGACAAATCTAATGCACATCCTGGTGGTACTTACAATGAATTGACTCATCAGCTCTTCCTTGGGAAGTTTGATGCTGTGGTGGGTGACATAACGATCCGAGCCAATAGGTCTGAGTACATAGACTATACATTACCATTCACAGAATCTGGCGTGGCCATGGTCGTGCCGATGAAGAGCAGCAAGAACACTAGCGTGTGGGCTTTCTTAAAGCCTCTCACTTGGAAGTTATGGGTCGTTATAGGCAGCTCCTTTGTATTCATGGCAGTTATTGTTTGGACACTCGAACATCGAGTCAACGAGAAATTCAATGGAAGTGCTGTTGATCAGATTTTTAACAGTCTTTGGTACTCTTTTTCCACCATGGTGTTCGCTCATCGAGAGCGTACATACAACCACTGCACCAAAATTGTGGTAATAATATGGCTGTTTGTGGTTCTTATCATTACACAAAGTTACACTGCAAGTTTGGCTTCACTTTTGACGGTCCAAGAGCTCAAAACAACTGTAACTGATATCAATCAGCTTCTTAAAAATGGAGAGAACGTCGGGTATCAAGGAGGTTCTTTCGTTTACGAGATTCTCAAGTCGTTGAAGTTCCATGATTCCCAACTCAAAACTTATCAATCTCCAGAACAAATGCATGAACTTTTTCTCAAAGGAAGCATCAATGGCGGAATTTCTGCTGCTGTGGATGAAAACCCTTATATTAAGTTGTTTCTTGCCAAATATTGCTCCCAATATACCACCACCGAACCCACTTACAAAGCCGATGGATTTGGTTTCGGTTTTCCGATAGGCTCGCCGTTAGTACCTGACATTTCGAGAGCGATTTTGAAGGTAACGGAGGGTGATAGAATAAGAGAGATCGAAAACGCATGGTTCAAGAAGGTGAGAGAATGTTCGAGTTCAGAAGCCGCTGAATTGTCTTCTACCCGCCTCAGTATCGACAGTTTTGAGGGACTTTTTCTCATAACCGCCGGTACTTCCATATCTTTTGTGGTCGGTTACCTTGTCTACTTTCTCTACATAGAACTGCCGAAATCTTGGAGAGCTAACCCTTCCTTATGGACAGTATTAACCCACTTGTTTTCCACGTTCATGGCTATAGATGACGAAGCTATAGCTCTTCGAAAAAGTCACTGA 2475 43.56 MGLSCISMALADFYSSRNRYKTRVILNTIDSNDTIVGAAAAALDLIKKEEVQSIIGPTSSMQASFMIDVGDKAQVPIISFSATRPSLTSHRSPFFFRIAQADSFQVKAIAAIVKAFKWRKVVPIYVDNEFGDGIIPYLVDALQEVDANVPYQTLISPTATNDEIELKLSNLMNLQTRVFVVHMLPDLASRLFTMAKKKGMMGRGFAWIVTDAITNEFNSMEPSILDQSMQGVLGIKTYVPGTKRLESFKRGWQRRFLSYYPTIEEIPELNVFGLWAYDTAWAIATAVEKAGTDNLRYSKPNNLREALSNVRFRGLAGEFSLVNGQLQSFVFEIVNVIGNERRSVGFWTPKAGLTTSLRHSGKESVLRPIIWPGDTEKAPKGWEIPTGEKKLRVGVPVKDGFLEFVNVVRDPKTNATQVSGYCIDVFKAVIEALPYAVTYEFIPNDKSNAHPGGTYNELTHQLFLGKFDAVVGDITIRANRSEYIDYTLPFTESGVAMVVPMKSSKNTSVWAFLKPLTWKLWVVIGSSFVFMAVIVWTLEHRVNEKFNGSAVDQIFNSLWYSFSTMVFAHRERTYNHCTKIVVIIWLFVVLIITQSYTASLASLLTVQELKTTVTDINQLLKNGENVGYQGGSFVYEILKSLKFHDSQLKTYQSPEQMHELFLKGSINGGISAAVDENPYIKLFLAKYCSQYTTTEPTYKADGFGFGFPIGSPLVPDISRAILKVTEGDRIREIENAWFKKVRECSSSEAAELSSTRLSIDSFEGLFLITAGTSISFVVGYLVYFLYIELPKSWRANPSLWTVLTHLFSTFMAIDDEAIALRKSH 824
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 24604918 24613795 + MELO3C011325.2.1 Cme03g01551 323562

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01551 824 SUPERFAMILY Periplasmic binding protein-like II 368 739 - -
Cme03g01551 824 CDD GluR_Plant 389 738 - -
Cme03g01551 824 Pfam Ligand-gated ion channel 740 771 IPR001320 GO:0015276|GO:0016020
Cme03g01551 824 Pfam Bacterial extracellular solute-binding proteins, family 3 415 739 IPR001638 -
Cme03g01551 824 PANTHER GLUTAMATE RECEPTOR 2.9 1 807 - -
Cme03g01551 824 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 1 807 - -
Cme03g01551 824 CDD PBP1_GABAb_receptor_plant 1 357 IPR044440 -
Cme03g01551 824 Gene3D - 273 390 - -
Cme03g01551 824 SUPERFAMILY Periplasmic binding protein-like I 7 373 IPR028082 -
Cme03g01551 824 Gene3D - 685 746 - -
Cme03g01551 824 Gene3D - 103 271 - -
Cme03g01551 824 PIRSF IGluLR_plant 1 819 IPR017103 -
Cme03g01551 824 Pfam Receptor family ligand binding region 5 338 IPR001828 -
Cme03g01551 824 Gene3D - 510 650 - -
Cme03g01551 824 Gene3D - 391 509 - -
Cme03g01551 824 SMART GluR_14 390 740 IPR001320 GO:0015276|GO:0016020
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01551 K05387 GRIP; glutamate receptor, ionotropic, plant - csv:101203550 1432.54
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01505 Cme-Chr2:22142211 Cme03g01551 Cme-Chr3:24604918 1.94E-116 dispersed
Cme02g01511 Cme-Chr2:22165804 Cme03g01551 Cme-Chr3:24604918 1.61E-126 dispersed
Cme02g01513 Cme-Chr2:22200685 Cme03g01551 Cme-Chr3:24604918 0 dispersed
Cme03g01551 Cme-Chr3:24604918 Cme04g01184 Cme-Chr4:16178560 0 dispersed
Cme07g00553 Cme-Chr7:4655462 Cme03g01551 Cme-Chr3:24604918 1.44E-133 dispersed
Cme03g01550 Cme-Chr3:24595657 Cme03g01551 Cme-Chr3:24604918 0 tandem
Cme03g01551 Cme-Chr3:24604918 Cme03g01552 Cme-Chr3:24614040 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g631 . . . . . . . . . Cmo12g00332 . . . . . Cpe07g00336 . Bhi04g00081 Tan02g2792 . . Hepe10g0197 . Lcy13g1866 . . . . . . . . . . . . . . Cme03g01551 . . Bda01g01359 . . . . . . . . . Cma12g00380 . . . . . . . . . . . . . . . . . . . . Chy03g01064 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000144 7 5 8 3 3 6 2 4 6 9 4 4 7 6 7 9 4 15 6 5 12 6 5 10 9 7 3 6 6 18 202