Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01552 ATGAGGAGACGAAAGGGTATGAAAAGTGGTTTTTGGGTGTTGCTGATGATGCTCTTGTTGGCGGCGGCGATGGTGGCAGCGAAGGAGGGGGAGGAGGAGGAGGAGAAGGCGGCGGTGGCAGTGAAAGTGAAGGTGGGTGTAGTTTTCGATTGGGATGATTATGGGAAGGTGGATTTCAGTTGCATCTCAATGGCTCTCTCAGATTTTTATGCTTCTCGGAGTTATTATAAGACAAGAGTGGTTCTTAAGCCCATGGACTCCAATGGTACCGTTGTTGATGCAGCTGCTGCAGCTCTAGAATTGATAAAGAAAGAGGAAGTACAAGCCATTTTAGGTCCAACAAGCTCAATGCAAGCCAACTTCATGATCGACATTGGAGACAAAGCACAAGTTCCCATAATCTCATTTTCAGCCACACGACCTTCTCTCACTTCTCACCGCAGCTCTTTCTTTTTTCGAGTTGCCCAAGACGATTCCTCTCAAGTTAAAGCCATCGGAGCCATCGTCAAAACCTTCAAATGGCGAAAAGTCGTCCCAATCTATGTCGACAACGAGTTCGGCGATGGCATCATCCCTTACCTCATCGACGCGCTCCAAGAAGTCAATGCTCACGTACCTTATCAAAGCATCATTTCCCCGGATGTAACCGACGACCATCTCACTAGCGAACTTTACAAATTAATGACAATGCAGACACGAGTGTTTGTGGTACACATGTTATCTGACCTTGCCTCTCGTATTTTCACCAAAGCAAAACAAATCGGAATGATGAAAAAAGGGTATGTTTGGATAATAACGGATGGTGTTACAAACATGTTGGAGTCCATAAAGCCTTCAACTTTTGAGTCAATGCAAGGAGTTATTGGAATAAAAACTTACGTCCCTAGAACTGAAAAGCTTGAATCTTTTGAACGTGATTGGAGAAAGAGATTTCTAGGGTCTTATCCAAAAATGGAAGAAGTTCCTGAGCTGGACGTGTTTGCATTATGGGCCTACGATGCGGCTTGGGCCTTAGCCATTGCAGTGGAAAAAGCTGGGACTGACAACCTTAGATATAGCCCAACTAATTTTACATCTTTGAACTATTTATACAATCTTGGTTTAAATCAGAATGGTGGGAAGCTGCGTGATGCGTTTTCGAAGGTTAAATTCAAGGGTTTGTCTGGAGATTTTAGTGTGAAACATGGGCAATTGGATTGGGAGATTTTTGAGATAGTGAATGTGATTGGGAATGGGAGAAGGAATGTGGGGTTTTGGTCACCGGAAAGTGGGCTGAGGACGGAATTGGAAAGAGGGAGAAATGGGCTGAGAACGATCATATGGGGCGGCGGCGATTCGGGGTTTCCGCCGAAAGGGTGGGAGATTCCGACGAATGAGAAGAAGCTGAGGGTGGTGGTTCCGGTAAAGGATGGATTTTGGGATTTTGTGAGTGTGGTTCGTGATCCTGTGACCAATGAAACGAAAGTGAGTGGTTATTGTATAGATGTGTTTAAGGCTGTGATTGAAGCTTTGCCTTATGCTATAGCTTATGAGCTTATTCCTTACCATAAATCTGCGGCGGAGCCAGGTGGCACCTACAATGACTTGGTTGATCAAATCTATCTTGGGGAGTTTGATGCTTTGGTGGGTGACTTGACAATCCGAGCAAACAGGTCAAGATATATTGACTACACATTGCCATTTGCAGAGTCAGGGGTCTCAATGGTTGTGCCAATAATGAGCACCAAGAACACCAATGCATGGGTCTTCATAAAGCCTCTAACAGGCCATCTCTGGTCACTCACTGGCGGTTTCTTCCTTGTCATGGCACTTGTTGTTTGGATTTTGGAACATCGAGTCAATGAAGAGTTTCGTGGAAGTCCAGCGGATCAGGTCTTTACCAGTCTTTGGTACTCTTTCTCCACTATGGTTTTTGCCCATCGGGAGATAACATTGAACAATTGGACGAGATTTGTGATGATAGTATGGCTATTTGTGGTTTTGATCATCACACAAAGTTACACTGCTAGTTTGGCCTCATATTTGACGGTTCAAGAGTTCAAACCGGCTGTGACTGATATCAATCAACTGCAGAAAAATGGAGAGAAAATTGGGCACAAAGTTGGTTCTTTTATCCATGAGATTCTCAAGTCGTTGAAGTTTGAAGAGTACCAACTCAAGACTTACCGTACTGCAGAAGAAATGCACGATCTTTTATCCAAAGGAAGCGCCAATGGTGGAATTTCTGCTGCCATGGATGAAAACCCTTACATCAAGTTGTTTCTCGCCAAGTACTGCTCACGATATACTACCACTGAACCCACCTTTAAAGCTGATGGCTTTGGTTTTGGTTTCCCCAAAGGTTCGCCTTTAGTACCCGATATTTCAAGAGCGATCTTGGAGGTGACGGAAAGCGACAGAATGAGAGAAATTGAAAACGCATGGTTCAAAAAGTTGGGAGAATGTTCGATATCGGATGCTTCGAAGTTGTCGTCGACTCGTCTGAGCATCGACAGCTTCTGGGCACTTTTTGTTATCGTGACATGTGTGTCTGCAGTTTCTGTCATCTGTTACATCATCAAATTTCTGTACGACCAGAAAGGCGTGTGGTCGAAGGAAATTCGTTCGACGACTGGGGAAAAATTGAGGGAGTTGGTTAAAACATTCATGGATAGAGATGCAGGAACTCACCCACTTAGAAGAAGGGTATTCATAAATGGCGCTCCTATTCATCCACAACCTCTAGATACACTCGAGATGCTCCTTTCTTTCCTGGCCCCTATATCAATGGTGTTGCAAAATTCTGCGACCGTTGTAACGGTGCAAGACGAGGAGGAGAAGGTGGTGCCTGGAGAAGTGAAAGTGAAGGTGGGTGTGGTTTTTGATTTAGATTCTGTTTTTGGGGAGATGAGTTTGAGTTGTATTTCAATGGCTCTGGATGATTTGTATTCTTCTCGGAGTTATTACAAGACTAGAATTGTTCTCCACAGCATTGACTCCAATGACACTGTTGTTGATGCAGCTGCTGCAGCTCTAGAATTGATAAAGAAAGAGGAAGTGCAAGCCATTATAGGGCCAACAAGCTCTATGCAAGCCAACTTCATCATCAACATTGGAGACAAAGCAGAAGTTCCCATCATCTCATTTTCAGCCACACGACCTTCCCTCACTTCCCACCGCAGCTCTTTCTTCTTCCGAGCTGCTCAAAACGATTCGTCTCAAGTCAAAGCCATTGGAGCCATCGTTAAGACCTTCAAATGGCGACAAGTTGTCCCCATCCATAGCGACAATGAGTTTGGCGAAGGTATCATACCTTACCTAATCGACGCTCTACAAGAAGTCGACACCGATGTGCCATACCAAAGCAAAATTTCCGCCTCTGCCAGGGACGAGCAAATCATAGACGAGCTTAACAACTTGATGAAAATGCCGACTAGAGTGTTTGTAGTGCACATGGCACCCCACCATGCTTCACGATTGTTCACAAAGGCTAAAGAAATTGGAATGATGAAACGAGGCTACGTTTGGATAATCACAGATGCTATAGCTAATCTATTGGATTTAATAGACCCTTCAGTCCTTGAGGCAATGCAAGGAGTTGTGGGAATAAAAACTTACGTCCCAAGATCCAAAGGGCTTGATTCTTTCAAACATGATTGGAGGAAGAGATTTCAAAGGAAGGAAGAAGACATTCCAGAGGTAGACGTATTTGGGTTATGGGCTTATGACGCAGCTTGGGCGCTTGCCATGGCTGTGGAAAAAGCCGGGACCGACAATCTTCGGTACACCTCAACCAACATTACCGCATCGAAAATGAACTCAACTAACTATCTATATACCCTGGGGGTGAATCAAAATGGTCAGAAATTGCGAGATGCATTCTCAAACCTCAAGTTCAGGGGGTTGGCCGGCGAGTTCAGTTTAATTGATGGACAATTACAGTCATCTCTTTTTGAGATAGTGAATGTAAATGGGAATGGTAGACGAAACGTTGGGTTTTGGTCGGCAGAAAGTGGGCTGAGGAGGAAGGTGGAAGAGTCGGAAAGATCGGCGAAGGGGTTGAGATCGATCATATGGCCAGGCGAGCGTATTGTTACACCAAAAGGATGGGAAATTCCAACGAACGGGAAGAAGTTGAGAATTGGAGTTCCGGTGAAGCATGGATTTAGGGAGTTTGTGAGTGTGATTCGTGATCCTAAAACAAATGCCACAATTGATGTAGGAGGATATTGCATTGATGTGTTTAAGGCTGTGATTGAAACCTTGCCTTACAAGGTTGATTATGAGTTTGTTCCTGCCAACCCCAATTTCAGCTACAACGAATTGACTTATCAAGTCTTCCTCGGTAAATTTGATGCTGTGGTGGGCGACATAACGATCCGAGCGAATAGATCTTCATACCTAGATTACACATTGCCATTCACAGAATCTGGGGTGGCCATGGTTGTGCCAATGAAAAACAGCAAGAAAACCAACGCATGGGTATTTCTAAAGCCTCTTACACGGGATTTGTGGTTCGTCACTGCATTCTTCTTTGTGTTTGTGGCATTTGTTATTTGGATTCTTGAACATCGAGTCAATGAACAGTTTCGTGGAAGTCCTTTGGATCAGCTCTGTACTAGTCTTTGGTACTCCTTCTCCACCATGGTCTTTGCTCATAGGGAAGTTACATTGAACAATTTGACAAGAGTTGTGGTGGTAGTATGGCTATTTGTGGTTCTCATAATTACACAAAGTTACACTGCAAGTTTGGCCTCACTTTTGACGGTTCAAGATCTGAAACCAACTGTTACTGATATCAATCAACTTCTTAAAAATGGAGACAACATTGGATATCAAGATGGTTCGTTTGTGTACGAGATTCTTAAGTCATTGAAGTTCCATGATTCTCAGCTCAAATCTTACGAATCTCCAAAAGAAATGCACCAACTTTTCACTAGAGGAAGCATCAATGGAGGAATATCTGCTGCTCTTGATGAAATCCCTTATATTAAGTTGTTTCTTGCCATGTATTGCTCTCAATACACCACCACCGAACCCACCTATAAAGCCGATGGTTTTGGTTTTGGATTTCCAATAGGTTCGCCTTTAGTTCCTCATATCTCAAGAAGAATCTTGGAGGTGACAGAAAGCGAGAGAATGAAAAAGATCGAAGAGAAATGGTTCAAAACGTTAAAAGAATGTACGGCTTCAAAAGTGGCAGAGTTGTCTTCCACCCGCTTGAGCATCAACAGCTTCTGGGCGCTTTTCCTCATCACTGGAGTTGCTTCCCTATGTTCTGTGGCTTTTTACGTCGGCAAATTTCTGTACGACGAACGGACGCGGTGGCAAAACGTACAGTCTCCAATCGGTGAAAGATTATACAAGTTGGTCGGGGAGTTCATGAAGAGAGATCAGAGAGCTCACCCGCTGAGGCGGAGGATATCCATAAATGGGGTTCCTTTTAATCCACAAGCCATAGTTGCTAGTGATGATGACCACCCTCGAAGAGATTGA 5475 44.05 MRRRKGMKSGFWVLLMMLLLAAAMVAAKEGEEEEEKAAVAVKVKVGVVFDWDDYGKVDFSCISMALSDFYASRSYYKTRVVLKPMDSNGTVVDAAAAALELIKKEEVQAILGPTSSMQANFMIDIGDKAQVPIISFSATRPSLTSHRSSFFFRVAQDDSSQVKAIGAIVKTFKWRKVVPIYVDNEFGDGIIPYLIDALQEVNAHVPYQSIISPDVTDDHLTSELYKLMTMQTRVFVVHMLSDLASRIFTKAKQIGMMKKGYVWIITDGVTNMLESIKPSTFESMQGVIGIKTYVPRTEKLESFERDWRKRFLGSYPKMEEVPELDVFALWAYDAAWALAIAVEKAGTDNLRYSPTNFTSLNYLYNLGLNQNGGKLRDAFSKVKFKGLSGDFSVKHGQLDWEIFEIVNVIGNGRRNVGFWSPESGLRTELERGRNGLRTIIWGGGDSGFPPKGWEIPTNEKKLRVVVPVKDGFWDFVSVVRDPVTNETKVSGYCIDVFKAVIEALPYAIAYELIPYHKSAAEPGGTYNDLVDQIYLGEFDALVGDLTIRANRSRYIDYTLPFAESGVSMVVPIMSTKNTNAWVFIKPLTGHLWSLTGGFFLVMALVVWILEHRVNEEFRGSPADQVFTSLWYSFSTMVFAHREITLNNWTRFVMIVWLFVVLIITQSYTASLASYLTVQEFKPAVTDINQLQKNGEKIGHKVGSFIHEILKSLKFEEYQLKTYRTAEEMHDLLSKGSANGGISAAMDENPYIKLFLAKYCSRYTTTEPTFKADGFGFGFPKGSPLVPDISRAILEVTESDRMREIENAWFKKLGECSISDASKLSSTRLSIDSFWALFVIVTCVSAVSVICYIIKFLYDQKGVWSKEIRSTTGEKLRELVKTFMDRDAGTHPLRRRVFINGAPIHPQPLDTLEMLLSFLAPISMVLQNSATVVTVQDEEEKVVPGEVKVKVGVVFDLDSVFGEMSLSCISMALDDLYSSRSYYKTRIVLHSIDSNDTVVDAAAAALELIKKEEVQAIIGPTSSMQANFIINIGDKAEVPIISFSATRPSLTSHRSSFFFRAAQNDSSQVKAIGAIVKTFKWRQVVPIHSDNEFGEGIIPYLIDALQEVDTDVPYQSKISASARDEQIIDELNNLMKMPTRVFVVHMAPHHASRLFTKAKEIGMMKRGYVWIITDAIANLLDLIDPSVLEAMQGVVGIKTYVPRSKGLDSFKHDWRKRFQRKEEDIPEVDVFGLWAYDAAWALAMAVEKAGTDNLRYTSTNITASKMNSTNYLYTLGVNQNGQKLRDAFSNLKFRGLAGEFSLIDGQLQSSLFEIVNVNGNGRRNVGFWSAESGLRRKVEESERSAKGLRSIIWPGERIVTPKGWEIPTNGKKLRIGVPVKHGFREFVSVIRDPKTNATIDVGGYCIDVFKAVIETLPYKVDYEFVPANPNFSYNELTYQVFLGKFDAVVGDITIRANRSSYLDYTLPFTESGVAMVVPMKNSKKTNAWVFLKPLTRDLWFVTAFFFVFVAFVIWILEHRVNEQFRGSPLDQLCTSLWYSFSTMVFAHREVTLNNLTRVVVVVWLFVVLIITQSYTASLASLLTVQDLKPTVTDINQLLKNGDNIGYQDGSFVYEILKSLKFHDSQLKSYESPKEMHQLFTRGSINGGISAALDEIPYIKLFLAMYCSQYTTTEPTYKADGFGFGFPIGSPLVPHISRRILEVTESERMKKIEEKWFKTLKECTASKVAELSSTRLSINSFWALFLITGVASLCSVAFYVGKFLYDERTRWQNVQSPIGERLYKLVGEFMKRDQRAHPLRRRISINGVPFNPQAIVASDDDHPRRD 1824
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 24614040 24626634 - MELO3C011322.2.1 Cme03g01552 323563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01552 1824 Gene3D - 1665 1723 - -
Cme03g01552 1824 CDD PBP1_GABAb_receptor_plant 55 425 IPR044440 -
Cme03g01552 1824 Pfam Receptor family ligand binding region 62 410 IPR001828 -
Cme03g01552 1824 Pfam Receptor family ligand binding region 966 1319 IPR001828 -
Cme03g01552 1824 Gene3D - 1065 1230 - -
Cme03g01552 1824 Gene3D - 159 326 - -
Cme03g01552 1824 SMART GluR_14 1371 1717 IPR001320 GO:0015276|GO:0016020
Cme03g01552 1824 SMART GluR_14 461 811 IPR001320 GO:0015276|GO:0016020
Cme03g01552 1824 Pfam Ligand-gated ion channel 811 842 IPR001320 GO:0015276|GO:0016020
Cme03g01552 1824 Pfam Bacterial extracellular solute-binding proteins, family 3 485 810 IPR001638 -
Cme03g01552 1824 SUPERFAMILY Periplasmic binding protein-like I 42 421 IPR028082 -
Cme03g01552 1824 SUPERFAMILY Periplasmic binding protein-like II 1348 1716 - -
Cme03g01552 1824 PANTHER GLUTAMATE RECEPTOR 2.9 948 1792 - -
Cme03g01552 1824 CDD GluR_Plant 1370 1715 - -
Cme03g01552 1824 Gene3D - 754 816 - -
Cme03g01552 1824 SUPERFAMILY Periplasmic binding protein-like II 448 810 - -
Cme03g01552 1824 CDD GluR_Plant 460 809 - -
Cme03g01552 1824 CDD PBP1_GABAb_receptor_plant 954 1336 IPR044440 -
Cme03g01552 1824 Pfam Bacterial extracellular solute-binding proteins, family 3 1401 1716 IPR001638 -
Cme03g01552 1824 Gene3D - 1372 1484 - -
Cme03g01552 1824 Pfam Ligand-gated ion channel 1717 1749 IPR001320 GO:0015276|GO:0016020
Cme03g01552 1824 Gene3D - 1485 1622 - -
Cme03g01552 1824 Gene3D - 581 723 - -
Cme03g01552 1824 Gene3D - 461 580 - -
Cme03g01552 1824 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 43 890 - -
Cme03g01552 1824 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 948 1792 - -
Cme03g01552 1824 SUPERFAMILY Periplasmic binding protein-like I 947 1354 IPR028082 -
Cme03g01552 1824 Gene3D - 1257 1371 - -
Cme03g01552 1824 Gene3D - 366 460 - -
Cme03g01552 1824 PANTHER GLUTAMATE RECEPTOR 2.9 43 890 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01369 Cme-Chr3:23174475 Cme03g01552 Cme-Chr3:24614040 0 dispersed
Cme03g01550 Cme-Chr3:24595657 Cme03g01552 Cme-Chr3:24614040 0 dispersed
Cme03g01552 Cme-Chr3:24614040 Cme04g01184 Cme-Chr4:16178560 0 dispersed
Cme03g01912 Cme-Chr3:27235528 Cme03g01552 Cme-Chr3:24614040 3.19E-137 dispersed
Cme07g00554 Cme-Chr7:4664112 Cme03g01552 Cme-Chr3:24614040 1.30E-132 dispersed
Cme03g01551 Cme-Chr3:24604918 Cme03g01552 Cme-Chr3:24614040 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01552 K05387 - csv:101203794 1604.34