Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme03g01552 | ATGAGGAGACGAAAGGGTATGAAAAGTGGTTTTTGGGTGTTGCTGATGATGCTCTTGTTGGCGGCGGCGATGGTGGCAGCGAAGGAGGGGGAGGAGGAGGAGGAGAAGGCGGCGGTGGCAGTGAAAGTGAAGGTGGGTGTAGTTTTCGATTGGGATGATTATGGGAAGGTGGATTTCAGTTGCATCTCAATGGCTCTCTCAGATTTTTATGCTTCTCGGAGTTATTATAAGACAAGAGTGGTTCTTAAGCCCATGGACTCCAATGGTACCGTTGTTGATGCAGCTGCTGCAGCTCTAGAATTGATAAAGAAAGAGGAAGTACAAGCCATTTTAGGTCCAACAAGCTCAATGCAAGCCAACTTCATGATCGACATTGGAGACAAAGCACAAGTTCCCATAATCTCATTTTCAGCCACACGACCTTCTCTCACTTCTCACCGCAGCTCTTTCTTTTTTCGAGTTGCCCAAGACGATTCCTCTCAAGTTAAAGCCATCGGAGCCATCGTCAAAACCTTCAAATGGCGAAAAGTCGTCCCAATCTATGTCGACAACGAGTTCGGCGATGGCATCATCCCTTACCTCATCGACGCGCTCCAAGAAGTCAATGCTCACGTACCTTATCAAAGCATCATTTCCCCGGATGTAACCGACGACCATCTCACTAGCGAACTTTACAAATTAATGACAATGCAGACACGAGTGTTTGTGGTACACATGTTATCTGACCTTGCCTCTCGTATTTTCACCAAAGCAAAACAAATCGGAATGATGAAAAAAGGGTATGTTTGGATAATAACGGATGGTGTTACAAACATGTTGGAGTCCATAAAGCCTTCAACTTTTGAGTCAATGCAAGGAGTTATTGGAATAAAAACTTACGTCCCTAGAACTGAAAAGCTTGAATCTTTTGAACGTGATTGGAGAAAGAGATTTCTAGGGTCTTATCCAAAAATGGAAGAAGTTCCTGAGCTGGACGTGTTTGCATTATGGGCCTACGATGCGGCTTGGGCCTTAGCCATTGCAGTGGAAAAAGCTGGGACTGACAACCTTAGATATAGCCCAACTAATTTTACATCTTTGAACTATTTATACAATCTTGGTTTAAATCAGAATGGTGGGAAGCTGCGTGATGCGTTTTCGAAGGTTAAATTCAAGGGTTTGTCTGGAGATTTTAGTGTGAAACATGGGCAATTGGATTGGGAGATTTTTGAGATAGTGAATGTGATTGGGAATGGGAGAAGGAATGTGGGGTTTTGGTCACCGGAAAGTGGGCTGAGGACGGAATTGGAAAGAGGGAGAAATGGGCTGAGAACGATCATATGGGGCGGCGGCGATTCGGGGTTTCCGCCGAAAGGGTGGGAGATTCCGACGAATGAGAAGAAGCTGAGGGTGGTGGTTCCGGTAAAGGATGGATTTTGGGATTTTGTGAGTGTGGTTCGTGATCCTGTGACCAATGAAACGAAAGTGAGTGGTTATTGTATAGATGTGTTTAAGGCTGTGATTGAAGCTTTGCCTTATGCTATAGCTTATGAGCTTATTCCTTACCATAAATCTGCGGCGGAGCCAGGTGGCACCTACAATGACTTGGTTGATCAAATCTATCTTGGGGAGTTTGATGCTTTGGTGGGTGACTTGACAATCCGAGCAAACAGGTCAAGATATATTGACTACACATTGCCATTTGCAGAGTCAGGGGTCTCAATGGTTGTGCCAATAATGAGCACCAAGAACACCAATGCATGGGTCTTCATAAAGCCTCTAACAGGCCATCTCTGGTCACTCACTGGCGGTTTCTTCCTTGTCATGGCACTTGTTGTTTGGATTTTGGAACATCGAGTCAATGAAGAGTTTCGTGGAAGTCCAGCGGATCAGGTCTTTACCAGTCTTTGGTACTCTTTCTCCACTATGGTTTTTGCCCATCGGGAGATAACATTGAACAATTGGACGAGATTTGTGATGATAGTATGGCTATTTGTGGTTTTGATCATCACACAAAGTTACACTGCTAGTTTGGCCTCATATTTGACGGTTCAAGAGTTCAAACCGGCTGTGACTGATATCAATCAACTGCAGAAAAATGGAGAGAAAATTGGGCACAAAGTTGGTTCTTTTATCCATGAGATTCTCAAGTCGTTGAAGTTTGAAGAGTACCAACTCAAGACTTACCGTACTGCAGAAGAAATGCACGATCTTTTATCCAAAGGAAGCGCCAATGGTGGAATTTCTGCTGCCATGGATGAAAACCCTTACATCAAGTTGTTTCTCGCCAAGTACTGCTCACGATATACTACCACTGAACCCACCTTTAAAGCTGATGGCTTTGGTTTTGGTTTCCCCAAAGGTTCGCCTTTAGTACCCGATATTTCAAGAGCGATCTTGGAGGTGACGGAAAGCGACAGAATGAGAGAAATTGAAAACGCATGGTTCAAAAAGTTGGGAGAATGTTCGATATCGGATGCTTCGAAGTTGTCGTCGACTCGTCTGAGCATCGACAGCTTCTGGGCACTTTTTGTTATCGTGACATGTGTGTCTGCAGTTTCTGTCATCTGTTACATCATCAAATTTCTGTACGACCAGAAAGGCGTGTGGTCGAAGGAAATTCGTTCGACGACTGGGGAAAAATTGAGGGAGTTGGTTAAAACATTCATGGATAGAGATGCAGGAACTCACCCACTTAGAAGAAGGGTATTCATAAATGGCGCTCCTATTCATCCACAACCTCTAGATACACTCGAGATGCTCCTTTCTTTCCTGGCCCCTATATCAATGGTGTTGCAAAATTCTGCGACCGTTGTAACGGTGCAAGACGAGGAGGAGAAGGTGGTGCCTGGAGAAGTGAAAGTGAAGGTGGGTGTGGTTTTTGATTTAGATTCTGTTTTTGGGGAGATGAGTTTGAGTTGTATTTCAATGGCTCTGGATGATTTGTATTCTTCTCGGAGTTATTACAAGACTAGAATTGTTCTCCACAGCATTGACTCCAATGACACTGTTGTTGATGCAGCTGCTGCAGCTCTAGAATTGATAAAGAAAGAGGAAGTGCAAGCCATTATAGGGCCAACAAGCTCTATGCAAGCCAACTTCATCATCAACATTGGAGACAAAGCAGAAGTTCCCATCATCTCATTTTCAGCCACACGACCTTCCCTCACTTCCCACCGCAGCTCTTTCTTCTTCCGAGCTGCTCAAAACGATTCGTCTCAAGTCAAAGCCATTGGAGCCATCGTTAAGACCTTCAAATGGCGACAAGTTGTCCCCATCCATAGCGACAATGAGTTTGGCGAAGGTATCATACCTTACCTAATCGACGCTCTACAAGAAGTCGACACCGATGTGCCATACCAAAGCAAAATTTCCGCCTCTGCCAGGGACGAGCAAATCATAGACGAGCTTAACAACTTGATGAAAATGCCGACTAGAGTGTTTGTAGTGCACATGGCACCCCACCATGCTTCACGATTGTTCACAAAGGCTAAAGAAATTGGAATGATGAAACGAGGCTACGTTTGGATAATCACAGATGCTATAGCTAATCTATTGGATTTAATAGACCCTTCAGTCCTTGAGGCAATGCAAGGAGTTGTGGGAATAAAAACTTACGTCCCAAGATCCAAAGGGCTTGATTCTTTCAAACATGATTGGAGGAAGAGATTTCAAAGGAAGGAAGAAGACATTCCAGAGGTAGACGTATTTGGGTTATGGGCTTATGACGCAGCTTGGGCGCTTGCCATGGCTGTGGAAAAAGCCGGGACCGACAATCTTCGGTACACCTCAACCAACATTACCGCATCGAAAATGAACTCAACTAACTATCTATATACCCTGGGGGTGAATCAAAATGGTCAGAAATTGCGAGATGCATTCTCAAACCTCAAGTTCAGGGGGTTGGCCGGCGAGTTCAGTTTAATTGATGGACAATTACAGTCATCTCTTTTTGAGATAGTGAATGTAAATGGGAATGGTAGACGAAACGTTGGGTTTTGGTCGGCAGAAAGTGGGCTGAGGAGGAAGGTGGAAGAGTCGGAAAGATCGGCGAAGGGGTTGAGATCGATCATATGGCCAGGCGAGCGTATTGTTACACCAAAAGGATGGGAAATTCCAACGAACGGGAAGAAGTTGAGAATTGGAGTTCCGGTGAAGCATGGATTTAGGGAGTTTGTGAGTGTGATTCGTGATCCTAAAACAAATGCCACAATTGATGTAGGAGGATATTGCATTGATGTGTTTAAGGCTGTGATTGAAACCTTGCCTTACAAGGTTGATTATGAGTTTGTTCCTGCCAACCCCAATTTCAGCTACAACGAATTGACTTATCAAGTCTTCCTCGGTAAATTTGATGCTGTGGTGGGCGACATAACGATCCGAGCGAATAGATCTTCATACCTAGATTACACATTGCCATTCACAGAATCTGGGGTGGCCATGGTTGTGCCAATGAAAAACAGCAAGAAAACCAACGCATGGGTATTTCTAAAGCCTCTTACACGGGATTTGTGGTTCGTCACTGCATTCTTCTTTGTGTTTGTGGCATTTGTTATTTGGATTCTTGAACATCGAGTCAATGAACAGTTTCGTGGAAGTCCTTTGGATCAGCTCTGTACTAGTCTTTGGTACTCCTTCTCCACCATGGTCTTTGCTCATAGGGAAGTTACATTGAACAATTTGACAAGAGTTGTGGTGGTAGTATGGCTATTTGTGGTTCTCATAATTACACAAAGTTACACTGCAAGTTTGGCCTCACTTTTGACGGTTCAAGATCTGAAACCAACTGTTACTGATATCAATCAACTTCTTAAAAATGGAGACAACATTGGATATCAAGATGGTTCGTTTGTGTACGAGATTCTTAAGTCATTGAAGTTCCATGATTCTCAGCTCAAATCTTACGAATCTCCAAAAGAAATGCACCAACTTTTCACTAGAGGAAGCATCAATGGAGGAATATCTGCTGCTCTTGATGAAATCCCTTATATTAAGTTGTTTCTTGCCATGTATTGCTCTCAATACACCACCACCGAACCCACCTATAAAGCCGATGGTTTTGGTTTTGGATTTCCAATAGGTTCGCCTTTAGTTCCTCATATCTCAAGAAGAATCTTGGAGGTGACAGAAAGCGAGAGAATGAAAAAGATCGAAGAGAAATGGTTCAAAACGTTAAAAGAATGTACGGCTTCAAAAGTGGCAGAGTTGTCTTCCACCCGCTTGAGCATCAACAGCTTCTGGGCGCTTTTCCTCATCACTGGAGTTGCTTCCCTATGTTCTGTGGCTTTTTACGTCGGCAAATTTCTGTACGACGAACGGACGCGGTGGCAAAACGTACAGTCTCCAATCGGTGAAAGATTATACAAGTTGGTCGGGGAGTTCATGAAGAGAGATCAGAGAGCTCACCCGCTGAGGCGGAGGATATCCATAAATGGGGTTCCTTTTAATCCACAAGCCATAGTTGCTAGTGATGATGACCACCCTCGAAGAGATTGA | 5475 | 44.05 | MRRRKGMKSGFWVLLMMLLLAAAMVAAKEGEEEEEKAAVAVKVKVGVVFDWDDYGKVDFSCISMALSDFYASRSYYKTRVVLKPMDSNGTVVDAAAAALELIKKEEVQAILGPTSSMQANFMIDIGDKAQVPIISFSATRPSLTSHRSSFFFRVAQDDSSQVKAIGAIVKTFKWRKVVPIYVDNEFGDGIIPYLIDALQEVNAHVPYQSIISPDVTDDHLTSELYKLMTMQTRVFVVHMLSDLASRIFTKAKQIGMMKKGYVWIITDGVTNMLESIKPSTFESMQGVIGIKTYVPRTEKLESFERDWRKRFLGSYPKMEEVPELDVFALWAYDAAWALAIAVEKAGTDNLRYSPTNFTSLNYLYNLGLNQNGGKLRDAFSKVKFKGLSGDFSVKHGQLDWEIFEIVNVIGNGRRNVGFWSPESGLRTELERGRNGLRTIIWGGGDSGFPPKGWEIPTNEKKLRVVVPVKDGFWDFVSVVRDPVTNETKVSGYCIDVFKAVIEALPYAIAYELIPYHKSAAEPGGTYNDLVDQIYLGEFDALVGDLTIRANRSRYIDYTLPFAESGVSMVVPIMSTKNTNAWVFIKPLTGHLWSLTGGFFLVMALVVWILEHRVNEEFRGSPADQVFTSLWYSFSTMVFAHREITLNNWTRFVMIVWLFVVLIITQSYTASLASYLTVQEFKPAVTDINQLQKNGEKIGHKVGSFIHEILKSLKFEEYQLKTYRTAEEMHDLLSKGSANGGISAAMDENPYIKLFLAKYCSRYTTTEPTFKADGFGFGFPKGSPLVPDISRAILEVTESDRMREIENAWFKKLGECSISDASKLSSTRLSIDSFWALFVIVTCVSAVSVICYIIKFLYDQKGVWSKEIRSTTGEKLRELVKTFMDRDAGTHPLRRRVFINGAPIHPQPLDTLEMLLSFLAPISMVLQNSATVVTVQDEEEKVVPGEVKVKVGVVFDLDSVFGEMSLSCISMALDDLYSSRSYYKTRIVLHSIDSNDTVVDAAAAALELIKKEEVQAIIGPTSSMQANFIINIGDKAEVPIISFSATRPSLTSHRSSFFFRAAQNDSSQVKAIGAIVKTFKWRQVVPIHSDNEFGEGIIPYLIDALQEVDTDVPYQSKISASARDEQIIDELNNLMKMPTRVFVVHMAPHHASRLFTKAKEIGMMKRGYVWIITDAIANLLDLIDPSVLEAMQGVVGIKTYVPRSKGLDSFKHDWRKRFQRKEEDIPEVDVFGLWAYDAAWALAMAVEKAGTDNLRYTSTNITASKMNSTNYLYTLGVNQNGQKLRDAFSNLKFRGLAGEFSLIDGQLQSSLFEIVNVNGNGRRNVGFWSAESGLRRKVEESERSAKGLRSIIWPGERIVTPKGWEIPTNGKKLRIGVPVKHGFREFVSVIRDPKTNATIDVGGYCIDVFKAVIETLPYKVDYEFVPANPNFSYNELTYQVFLGKFDAVVGDITIRANRSSYLDYTLPFTESGVAMVVPMKNSKKTNAWVFLKPLTRDLWFVTAFFFVFVAFVIWILEHRVNEQFRGSPLDQLCTSLWYSFSTMVFAHREVTLNNLTRVVVVVWLFVVLIITQSYTASLASLLTVQDLKPTVTDINQLLKNGDNIGYQDGSFVYEILKSLKFHDSQLKSYESPKEMHQLFTRGSINGGISAALDEIPYIKLFLAMYCSQYTTTEPTYKADGFGFGFPIGSPLVPHISRRILEVTESERMKKIEEKWFKTLKECTASKVAELSSTRLSINSFWALFLITGVASLCSVAFYVGKFLYDERTRWQNVQSPIGERLYKLVGEFMKRDQRAHPLRRRISINGVPFNPQAIVASDDDHPRRD | 1824 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 24614040 | 24626634 | - | MELO3C011322.2.1 | Cme03g01552 | 323563 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme03g01552 | 1824 | Gene3D | - | 1665 | 1723 | - | - | |
Cme03g01552 | 1824 | CDD | PBP1_GABAb_receptor_plant | 55 | 425 | IPR044440 | - | |
Cme03g01552 | 1824 | Pfam | Receptor family ligand binding region | 62 | 410 | IPR001828 | - | |
Cme03g01552 | 1824 | Pfam | Receptor family ligand binding region | 966 | 1319 | IPR001828 | - | |
Cme03g01552 | 1824 | Gene3D | - | 1065 | 1230 | - | - | |
Cme03g01552 | 1824 | Gene3D | - | 159 | 326 | - | - | |
Cme03g01552 | 1824 | SMART | GluR_14 | 1371 | 1717 | IPR001320 | GO:0015276|GO:0016020 | |
Cme03g01552 | 1824 | SMART | GluR_14 | 461 | 811 | IPR001320 | GO:0015276|GO:0016020 | |
Cme03g01552 | 1824 | Pfam | Ligand-gated ion channel | 811 | 842 | IPR001320 | GO:0015276|GO:0016020 | |
Cme03g01552 | 1824 | Pfam | Bacterial extracellular solute-binding proteins, family 3 | 485 | 810 | IPR001638 | - | |
Cme03g01552 | 1824 | SUPERFAMILY | Periplasmic binding protein-like I | 42 | 421 | IPR028082 | - | |
Cme03g01552 | 1824 | SUPERFAMILY | Periplasmic binding protein-like II | 1348 | 1716 | - | - | |
Cme03g01552 | 1824 | PANTHER | GLUTAMATE RECEPTOR 2.9 | 948 | 1792 | - | - | |
Cme03g01552 | 1824 | CDD | GluR_Plant | 1370 | 1715 | - | - | |
Cme03g01552 | 1824 | Gene3D | - | 754 | 816 | - | - | |
Cme03g01552 | 1824 | SUPERFAMILY | Periplasmic binding protein-like II | 448 | 810 | - | - | |
Cme03g01552 | 1824 | CDD | GluR_Plant | 460 | 809 | - | - | |
Cme03g01552 | 1824 | CDD | PBP1_GABAb_receptor_plant | 954 | 1336 | IPR044440 | - | |
Cme03g01552 | 1824 | Pfam | Bacterial extracellular solute-binding proteins, family 3 | 1401 | 1716 | IPR001638 | - | |
Cme03g01552 | 1824 | Gene3D | - | 1372 | 1484 | - | - | |
Cme03g01552 | 1824 | Pfam | Ligand-gated ion channel | 1717 | 1749 | IPR001320 | GO:0015276|GO:0016020 | |
Cme03g01552 | 1824 | Gene3D | - | 1485 | 1622 | - | - | |
Cme03g01552 | 1824 | Gene3D | - | 581 | 723 | - | - | |
Cme03g01552 | 1824 | Gene3D | - | 461 | 580 | - | - | |
Cme03g01552 | 1824 | PANTHER | IONOTROPIC GLUTAMATE RECEPTOR | 43 | 890 | - | - | |
Cme03g01552 | 1824 | PANTHER | IONOTROPIC GLUTAMATE RECEPTOR | 948 | 1792 | - | - | |
Cme03g01552 | 1824 | SUPERFAMILY | Periplasmic binding protein-like I | 947 | 1354 | IPR028082 | - | |
Cme03g01552 | 1824 | Gene3D | - | 1257 | 1371 | - | - | |
Cme03g01552 | 1824 | Gene3D | - | 366 | 460 | - | - | |
Cme03g01552 | 1824 | PANTHER | GLUTAMATE RECEPTOR 2.9 | 43 | 890 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme03g01369 | Cme-Chr3:23174475 | Cme03g01552 | Cme-Chr3:24614040 | 0 | dispersed | |
Cme03g01550 | Cme-Chr3:24595657 | Cme03g01552 | Cme-Chr3:24614040 | 0 | dispersed | |
Cme03g01552 | Cme-Chr3:24614040 | Cme04g01184 | Cme-Chr4:16178560 | 0 | dispersed | |
Cme03g01912 | Cme-Chr3:27235528 | Cme03g01552 | Cme-Chr3:24614040 | 3.19E-137 | dispersed | |
Cme07g00554 | Cme-Chr7:4664112 | Cme03g01552 | Cme-Chr3:24614040 | 1.30E-132 | dispersed | |
Cme03g01551 | Cme-Chr3:24604918 | Cme03g01552 | Cme-Chr3:24614040 | 0 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme03g01552 | K05387 | - | csv:101203794 | 1604.34 |