Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01557 ATGGCTTCGAAGCTTTGTGACTCGTGTAAGTCGGCTACGGCCACTCTCTTCTGCCGAGCTGACTCTGCTTTCCTTTGCCTTGGATGTGACTCCAAAGTTCACGCAGCCAACAAGCTCGCCTCTCGCCATGCTCGTGTTTGGGTTTGTGAAGTCTGTGAGCAAGCTCCGGCTCATGTAACCTGTAAGGCTGACGCCGCCGCTCTCTGCCTCACTTGCGACCACGATATTCACTCTGCTAATCCCCTCGCACGACGTCATGAACGAGTTCCAGTTACGCCTTTCTACGACACATCCAACTCTGACAACTCACTCGCTGTTAAACCTGGCGCTGCAATCAACTTCCTCGACGACCGTTACTTCTCCGATGTTGACGCTGATGCCGCCGATGTTAGCAGAGAAGAAGCCGAAGCTGCTTCCTGGCTTCTTCCGAACCCTAACCCTAAGGCAATCGAAAGTTCAGATCTGAACTCCAGCAAGTTTGAGTTTCCAGAAATGGATCCTTACCTAGATCTGGATTACGGTCATGTAGATCCGAAATTAGAAGCGCAAGAGCAGAATAGCTCCGGTGCCGATGGAGTTGTTCCTGTTCAAAGCAAAGGCGTTCATCTCTCATCAGCAAACGATCGTTGCCTTGGTATAGACTTCACCGGCACCAAATCGTTCCCGTACGGTCATAATCCTCAGTCAATCAGTCACAGTGTGTCATCCTCTTCGATCGAGGTCGGAGTGGTGCCAGACGGGAACGCGATGACAGATGTATCAAATCCGTACACGAAACCTTCGACGGAATCGTCTGTTCAACCGCTGCAAATCTCGCCGGCGGATCGGGAAGCGAGAGTGTTAAGGTACAGAGAGAAGAGGAAGAATAGAAAGTTCGAGAAGACGATCCGATACGCATCTCGTAAAGCTTACGCTGAGACGAGACCGCGAATCAAAGGACGGTTCGCCAAACGGACGGACATCGAACTTGATGTCGATCGCGTGAGTGGATACGGCGTCGTTCCTTCGTTCTAA 1014 51.48 MASKLCDSCKSATATLFCRADSAFLCLGCDSKVHAANKLASRHARVWVCEVCEQAPAHVTCKADAAALCLTCDHDIHSANPLARRHERVPVTPFYDTSNSDNSLAVKPGAAINFLDDRYFSDVDADAADVSREEAEAASWLLPNPNPKAIESSDLNSSKFEFPEMDPYLDLDYGHVDPKLEAQEQNSSGADGVVPVQSKGVHLSSANDRCLGIDFTGTKSFPYGHNPQSISHSVSSSSIEVGVVPDGNAMTDVSNPYTKPSTESSVQPLQISPADREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTDIELDVDRVSGYGVVPSF 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 24667861 24669935 + MELO3C011317.2.1 Cme03g01557 323568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01557 337 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270
Cme03g01557 337 ProSiteProfiles CCT domain profile. 276 318 IPR010402 GO:0005515
Cme03g01557 337 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270
Cme03g01557 337 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 2 337 IPR045281 GO:0009909
Cme03g01557 337 Pfam B-box zinc finger 46 91 IPR000315 GO:0008270
Cme03g01557 337 Pfam B-box zinc finger 4 43 IPR000315 GO:0008270
Cme03g01557 337 CDD Bbox1_BBX-like 5 48 - -
Cme03g01557 337 SMART bboxneu5 1 48 IPR000315 GO:0008270
Cme03g01557 337 SMART bboxneu5 49 91 IPR000315 GO:0008270
Cme03g01557 337 Pfam CCT motif 276 318 IPR010402 GO:0005515
Cme03g01557 337 CDD Bbox1_BBX-like 48 91 - -
Cme03g01557 337 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 2 337 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01521 Cme-Chr2:22279407 Cme03g01557 Cme-Chr3:24667861 1.29E-104 dispersed
Cme03g00742 Cme-Chr3:13663527 Cme03g01557 Cme-Chr3:24667861 2.41E-08 dispersed
Cme03g01557 Cme-Chr3:24667861 Cme05g01392 Cme-Chr5:23182545 9.78E-77 dispersed
Cme08g00353 Cme-Chr8:2234301 Cme03g01557 Cme-Chr3:24667861 2.95E-11 dispersed
Cme03g01557 Cme-Chr3:24667861 Cme02g01520 Cme-Chr2:22258730 3.27E-102 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41046 PF00643 zf-B_box 3.60E-06 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01557 - - csv:101208063 653.284