Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01576 ATGAAGTTCATGAAGTTGGGATCAAAATCAGACGCCTTTCTAGCTGATGGAAAAACTACTCGGTATGTTTCATCTGAACTGCCAACGGACGTTACCATTTTTGTGGGTGAAGTAAAGTTTCTTGTTCATAAGTTTCCTCTGTTGTCCAAGAGCAATTGCTTACAGAAACTAGTATCGAAAGCCAATGAGGAGAATTCCGAAGAAATTCATCTGATTGATTTTCCTGGTGGCCCTAAGGCATTTGAAATCTGTGCAAAGTTTTGCTATGGAATGACTGTTACTCTTAATGCCTATAATGTAGTGGCTGCTCGCTGTGCAGCTGAATTCCTTGAAATGACAGAGGACATTGAAAGAGGAAATCTTGTATTTAAGATTGAAGTGTTCCTAAACTCTAGCATCTTCCGTAGTTGGAAAGATTCCATCATTGTGCTCCAAACTGCCAAATCTCTTCTTCCTTGGTCTGAAGATCTGAAGATTGTTGGAAGATGTATTGATTCAATTGCCTCAAAAACTTCCGTAGACCCTGCGAATATCACATGGTCTTACACATATAACAGGAAACTAGCAGAAGTGGATAGAATTGTAGAAGATGGAATCAAGTACCAAAAGAAAATTGATTGTGTACCAAACGACTGGTGGGTTGAAGATGTTTGTGAACTAGAGATTGATCTGTATAGACGTGTTATGATTGCTGTGAAATCGAAGGGCAGAATGGATGGTTCTGTCATTGGGGAGGCACTTAAAACTTATGCTGTTAGATGGTTACCAGACACCGTCAATGCTTTGGCCTCTGATGCTCATATTAAGAGGAACAGGTCCCTCATTGAAACAATCATTTGCTTGTTGCCATCTGACAGAAACATAGGTTGCTCATGCAGTTTCTTGCTCAAACTCATGAAGGTTGCCATTTTGGTTGGAGCTGATGATGCATTGAGGGAGGATTTGGTTAAGAGAATTGGGTTGAAGCTACACGAGGCTTCGGTCAAAGATTTATTGATTCTTGCACAATCTCCTCAAGTTACAAGATATGATGTTGAATTGGTTTATAGGATTGTGAATCAGTATTTTGTTCATCAAAAGTTTAACCGAAATACTGATGTTATCGAGAGGAGCGAGAAAGGGGCTGAAAATCTTTTACTGGGACATGGCTCCTCATTGAATGTAGCTAAATTGATTGACGAGTATCTCGCTGAAATTGCAGACGACCCAAATCTCTCACTTGCTAGTTTCATCGACTTGTCACAGTCGATTCCTGAATTTGCAAGGCCAATACATGATAGATTATATAAAGCAATTGACATTTATCTTAAGGTTCACCCAAGTTTGTCGAAAGTTGATAAGAGAAAGATATGTAGTCTGATTGATGTCAAGAAACTAACAACGGAGGCGTCGATGCACGCAGCGCAGAATGAACGACTCCCACTTAGAGTTGTAGTTCAAGTTCTCTTCTTCGAACAGGTTAGAGCCTCCGTTAGCGTCGAAGCACAAAACTCTCGAGACTCTTCAAGTGTAATGACAAGCATAGATGAAGAATGCCCGAAGGAGTTGGACAGCTGCAAGTCCCTCAAACACAATATGGGGCACATGAAGATAAGTGAAGACATTCAGAAAACGAAGAAGTTAGCTAAGAAGAGCAGCAAGAACAGTAGAAGTGGTATGCAACTGTTGCCGTCAAGGTCCAGGAGAATTTTTGATAAGTTATGGATCATGGGTAAAGGGCACGGGGAGAGTCGGAGTCCCGAAACGTCGGGGAGTTCTCAGAGTCCAACTTCAGTGGTTCCAGGAGATATGAAATCTTCTGGTTCATACACAAGACAGAGGAGGCACTCAATATCCTAG 1839 41.22 MKFMKLGSKSDAFLADGKTTRYVSSELPTDVTIFVGEVKFLVHKFPLLSKSNCLQKLVSKANEENSEEIHLIDFPGGPKAFEICAKFCYGMTVTLNAYNVVAARCAAEFLEMTEDIERGNLVFKIEVFLNSSIFRSWKDSIIVLQTAKSLLPWSEDLKIVGRCIDSIASKTSVDPANITWSYTYNRKLAEVDRIVEDGIKYQKKIDCVPNDWWVEDVCELEIDLYRRVMIAVKSKGRMDGSVIGEALKTYAVRWLPDTVNALASDAHIKRNRSLIETIICLLPSDRNIGCSCSFLLKLMKVAILVGADDALREDLVKRIGLKLHEASVKDLLILAQSPQVTRYDVELVYRIVNQYFVHQKFNRNTDVIERSEKGAENLLLGHGSSLNVAKLIDEYLAEIADDPNLSLASFIDLSQSIPEFARPIHDRLYKAIDIYLKVHPSLSKVDKRKICSLIDVKKLTTEASMHAAQNERLPLRVVVQVLFFEQVRASVSVEAQNSRDSSSVMTSIDEECPKELDSCKSLKHNMGHMKISEDIQKTKKLAKKSSKNSRSGMQLLPSRSRRIFDKLWIMGKGHGESRSPETSGSSQSPTSVVPGDMKSSGSYTRQRRHSIS 612
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 24776171 24781567 + MELO3C011299.2.1 Cme03g01576 323587

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01576 612 MobiDBLite consensus disorder prediction 578 612 - -
Cme03g01576 612 Pfam NPH3 family 211 464 IPR027356 -
Cme03g01576 612 ProSiteProfiles BTB domain profile. 29 97 IPR000210 GO:0005515
Cme03g01576 612 CDD BTB_POZ_NPY3-like 21 124 - -
Cme03g01576 612 PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN NPY1 6 600 IPR029961 GO:0060918|GO:0099402
Cme03g01576 612 SUPERFAMILY POZ domain 21 114 IPR011333 -
Cme03g01576 612 Gene3D Potassium Channel Kv1.1; Chain A 4 122 IPR011333 -
Cme03g01576 612 Pfam BTB/POZ domain 26 114 IPR000210 GO:0005515
Cme03g01576 612 PANTHER OS12G0117600 PROTEIN 6 600 IPR043454 -
Cme03g01576 612 ProSiteProfiles NPH3 domain profile. 211 488 IPR027356 -
Cme03g01576 612 MobiDBLite consensus disorder prediction 530 612 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01576 - - - csv:101210907 1181.78
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01576 Cme-Chr3:24776171 Cme08g00640 Cme-Chr8:4157842 0 dispersed
Cme12g00837 Cme-Chr12:15087030 Cme03g01576 Cme-Chr3:24776171 4.23E-80 dispersed
Cme03g01576 Cme-Chr3:24776171 Cme07g02176 Cme-Chr7:26126847 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g581 . . . . . . . . Cmo05g00352 Cmo12g00318 . Cma05g00348 . Car12g00348 Sed14g1268 Cpe07g00324 . Bhi04g00051 Tan02g2763 Cmetu04g0384 . . . . . . . . . . . . . . . . . . Cme03g01576 Blo17g00002 . Bda01g01360 . Bpe14g00601 . . Bma02g00007 . . . . Cma12g00365 . Car05g00294 Cpe11g00294 . . . . . . . . Cla08g01367 Cam08g1836 Cec08g1415 Cco08g1544 Clacu08g1531 . Cre08g1315 Lsi08g01250 . Chy03g01083 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004771 0 4 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 6 2 1 42