Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01578 ATGTCGGACGAAGAGCATCATTTTGAGTCCAAGGCCGACGCCGGAGCCTCCAAGACCTTCCCTCAACAGGCCGGAACCATCCGCAAGAATGGCTACATTGTCATCAAGGGCCGTCCCTGCAAGGTAGTTGAGGTTTCAACATCCAAGACTGGAAAGCATGGGCATGCTAAATGTCACTTTGTTGCAATCGATATCTTCACTGCCAAAAAACTTGAAGATATTGTTCCATCATCCCACAACTGTGATGTGAGTCTCTTGACTGACAATGGAAGCACAAAGGATGATTTGAGGCTTCCTACTGATGAAAGTTTACTTGCTCAGATTAAAGATGGATTTGCAGAAGGAAAGGACCTTGTTGTGAGTGTCATGTCAGCCATGGGAGAAGAACAAATTTGTGGCTTGAAGGATATCGGCCCAAAGAACTAA 426 45.77 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTAKKLEDIVPSSHNCDVSLLTDNGSTKDDLRLPTDESLLAQIKDGFAEGKDLVVSVMSAMGEEQICGLKDIGPKN 141
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 24781554 24783830 - MELO3C011298.2.1 Cme03g01578 323589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01578 141 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 83 137 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Cme03g01578 141 MobiDBLite consensus disorder prediction 1 20 - -
Cme03g01578 141 TIGRFAM eIF_5A: translation elongation factor IF5A 18 86 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Cme03g01578 141 SMART eIF_5a_2 66 135 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Cme03g01578 141 Gene3D - 1 80 IPR014722 -
Cme03g01578 141 PIRSF Transl_init_eIF5A 1 84 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Cme03g01578 141 PIRSF Transl_init_eIF5A 82 138 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Cme03g01578 141 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 83 135 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Cme03g01578 141 Gene3D - 81 137 IPR012340 -
Cme03g01578 141 PANTHER BNAA07G09420D PROTEIN 1 83 - -
Cme03g01578 141 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 83 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Cme03g01578 141 SUPERFAMILY Translation proteins SH3-like domain 15 86 IPR008991 -
Cme03g01578 141 SUPERFAMILY Nucleic acid-binding proteins 76 137 IPR012340 -
Cme03g01578 141 PANTHER BNAA07G09420D PROTEIN 83 137 - -
Cme03g01578 141 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 50 57 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme03g01578 Cme07g00120 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01059 Cme-Chr2:15557147 Cme03g01578 Cme-Chr3:24781554 1.35E-89 dispersed
Cme10g00380 Cme-Chr10:2439524 Cme03g01578 Cme-Chr3:24781554 1.94E-96 transposed
Cme03g01578 Cme-Chr3:24781554 Cme07g00120 Cme-Chr7:806737 4.49E-89 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01578 K03263 K02180 csv:101211156 271.552