Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01588 ATGGCCAGGCCTCAACAGCGTTATCGAGGCGTTCGTCAAAGACATTGGGGTTCATGGGTCTCTGAAATTCGTCACCCTTTATTGAAAACCAGAATTTGGCTTGGTACTTTCGAAACGGCTGAAGATGCTGCTAGAGCTTACGATGAAGCTGCTCGTTTAATGTGCGGTCCAAGAGCAAGAACCAACTTCCCTTTCAACTCAAATGACTCAAATTCCTCTTCTTCTAAACTCCTCTCTGCCAATTTGACTGCTAAACTCCACCGTTGCTGTATGGCGTCTCTTCATTTTCAGAAACCCGCCACCCATCGCTTCAATTCCGGCGCTGACGTGGCCGGGATTAAGCCGCTGACGGTGGAGGGAAACACCCAAACGGAGATCGGCCATCAGCCGTTCGTGGCCCTGGAAGAAGATCATATTGAACAGATGATTGAGGAATTGATTCATTATGGGTCTGTTGAGCTCTGCTCTGTTGTGCCACCCTCTCAGGCGTTTTGA 495 49.09 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPFNSNDSNSSSSKLLSANLTAKLHRCCMASLHFQKPATHRFNSGADVAGIKPLTVEGNTQTEIGHQPFVALEEDHIEQMIEELIHYGSVELCSVVPPSQAF 164
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 24896021 24897013 - MELO3C011287.2.1 Cme03g01588 323599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01588 164 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 125 158 - -
Cme03g01588 164 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 103 - -
Cme03g01588 164 Gene3D AP2/ERF domain 6 66 IPR036955 GO:0003700|GO:0006355
Cme03g01588 164 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Cme03g01588 164 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003 125 158 - -
Cme03g01588 164 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003 1 103 - -
Cme03g01588 164 SUPERFAMILY DNA-binding domain 7 65 IPR016177 GO:0003677
Cme03g01588 164 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Cme03g01588 164 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Cme03g01588 164 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Cme03g01588 164 CDD AP2 6 64 IPR001471 GO:0003700|GO:0006355
Cme03g01588 164 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01588 Cme-Chr3:24896021 Cme07g02041 Cme-Chr7:25368178 1.27E-48 dispersed
Cme03g01588 Cme-Chr3:24896021 Cme03g01589 Cme-Chr3:24902355 8.65E-64 tandem
Cme01g02563 Cme-Chr1:33532979 Cme03g01588 Cme-Chr3:24896021 3.27E-47 wgd
Cme03g01588 Cme-Chr3:24896021 Cme07g00103 Cme-Chr7:640263 9.09E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41050 PF00847 AP2 6.00E-12 CL0081 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01588 - - csv:101205730 306.605