Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01594 ATGGCTTTTCGCAACCAGCTCTCTCGGGAACTTCCTCTCCATTACGCGAATCAGCCTCAACAGCAGCAATCGGAACAGCCGCTTTCTGATAACACTCTGCGCTCGATTCTATCTGATCAACTTACGGATCACTCTACAGCTGGCGATGGTTCTAAGTCTGAAAATCCGCTTCAGAGCGCTCCCAATTGGTTGAATAGTGCGTTACTTCGGAATCAAACCCCTCATTCTCACTACTCCGGTGAGACCACGACGACCGCTGCGGATAACGTCAACACCGACTTTCTTAATCTTCACACGACTGCTCCCAATTCGTCCGGTCAATGGCTTTCCCGCCCGATCCTTCATCGCAATCAAAGTGATGTTATCGATGACGTCGCCGATGCTGCCGATGCTATGATTGGCGCTACTGCGACTTTATCGCGTGAATCGGATGATTTGAAGAACAACAGCAGCGGTGGAGGTGGGGAGGGTGTGAATAACAGCGACGATGTGGCGGTTGATAGCGATTGTAATGAAGGTGCTCGTGGTGGAGAAGCGGCGATGAATTGGCAGAATGCGCGGTTTAAGGCTGAAATTCTGGCGCATCCTCTTTACGAGCAGCTGCTCTCTGCTCATGTCGCCTGCCTCCGGATCGCAACGCCGGTGGATCAGTTGCCTAGAATAGATTCTCAGCTTTCTCGGTCTCAGAATGTGGCGGCGAAATACTCGTCGCTGGGCAACGGTTCCCAGTCCATAGTCAGCAATGGAAAAGAGCTTGATCAGTTCATGTACGTTTTAGAGATTCGAGAAAGACATTCTTCTTGGCAGAATCTAGCATGTCTTCCGGCATCGGATATAATCCATGCTTGTACTGTTTTGCCATCGTCGTGTTCTAGTAAACGTACGCATTATGTTTTATTACTTTGTTCTTTTAAAGAACAACTCCAGCAACATGTCCGTGTCCATGCAATGGAAGCAGTATATGCCTGCTGGGAAATTGAGCAATCTCTGCAAAGCTTGACAGGAAATACGGAGATAGCCTTCCTCCTGTTGGAGGACCGGAGGAAAACTGATGGAATGAAGTCAATTGTCCTAACGCTTATTCTTCCAGTCAAGGGTTGTGTTAGTTATGGCGTTTCACCAGGTGTAGGTACGGGTGCTACAATGTCTGATGATGACGAAGACCAAATAGATAGCGATGCTAATTTGTTTGATGGAAGTTTGGAGGGTCATGATACTATGGGTTTTGGTCCCCTTATCCCAACAGAGAGTGAGAGATCCTTGATGGAAAGGGTGAGGCACGAATTGAAGCATGAACTAAAGAATGGATACAAGGAGAAAATTGTAGATATAAGGGAGGAGATCTTGCGAAAAAGGAGAGCAGGTAAACTTCCTGGTGACACCACGTCCGTCTTAAAAGCTTGGTGGCAATCACATTCAAAATGGCCATATCCAACTGTGAGTATGCTGGAGGAAGATAAAGCAAAGTTGGTTCAGGAAACTGGTCTTCAATTAAAGCAGATAAATAACTGGTTTATTAACCAAAGGAAGAGGAATTGGCACACAAATCCTTCAACCTCAACAAACTTGAAGACTAAACGCAAAAGAAGTAATGCAGGTGAAGCAACAGGCAACGACCATCCGTAG 1626 46.74 MAFRNQLSRELPLHYANQPQQQQSEQPLSDNTLRSILSDQLTDHSTAGDGSKSENPLQSAPNWLNSALLRNQTPHSHYSGETTTTAADNVNTDFLNLHTTAPNSSGQWLSRPILHRNQSDVIDDVADAADAMIGATATLSRESDDLKNNSSGGGGEGVNNSDDVAVDSDCNEGARGGEAAMNWQNARFKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDSQLSRSQNVAAKYSSLGNGSQSIVSNGKELDQFMYVLEIRERHSSWQNLACLPASDIIHACTVLPSSCSSKRTHYVLLLCSFKEQLQQHVRVHAMEAVYACWEIEQSLQSLTGNTEIAFLLLEDRRKTDGMKSIVLTLILPVKGCVSYGVSPGVGTGATMSDDDEDQIDSDANLFDGSLEGHDTMGFGPLIPTESERSLMERVRHELKHELKNGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTVSMLEEDKAKLVQETGLQLKQINNWFINQRKRNWHTNPSTSTNLKTKRKRSNAGEATGNDHP 541
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 24942792 24947763 + MELO3C011281.2.1 Cme03g01594 323605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01594 541 ProSiteProfiles ELK domain profile. 428 448 IPR005539 GO:0003677
Cme03g01594 541 MobiDBLite consensus disorder prediction 11 29 - -
Cme03g01594 541 SMART KNOX2_2 241 335 IPR005541 GO:0003677|GO:0005634
Cme03g01594 541 MobiDBLite consensus disorder prediction 527 541 - -
Cme03g01594 541 MobiDBLite consensus disorder prediction 142 157 - -
Cme03g01594 541 Pfam ELK domain 428 449 IPR005539 GO:0003677
Cme03g01594 541 ProSiteProfiles 'Homeobox' domain profile. 448 515 IPR001356 GO:0003677
Cme03g01594 541 MobiDBLite consensus disorder prediction 142 167 - -
Cme03g01594 541 SMART KNOX1_2 186 230 IPR005540 GO:0003677|GO:0005634
Cme03g01594 541 Pfam KNOX2 domain 296 334 IPR005541 GO:0003677|GO:0005634
Cme03g01594 541 Pfam Homeobox KN domain 468 511 IPR008422 GO:0003677|GO:0006355
Cme03g01594 541 Gene3D - 449 514 - -
Cme03g01594 541 CDD homeodomain 451 516 IPR001356 GO:0003677
Cme03g01594 541 SMART HOX_1 450 519 IPR001356 GO:0003677
Cme03g01594 541 SMART ELK_2 428 449 IPR005539 GO:0003677
Cme03g01594 541 MobiDBLite consensus disorder prediction 509 526 - -
Cme03g01594 541 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 294 335 - -
Cme03g01594 541 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 372 531 - -
Cme03g01594 541 Pfam KNOX1 domain 189 228 IPR005540 GO:0003677|GO:0005634
Cme03g01594 541 SUPERFAMILY Homeodomain-like 450 518 IPR009057 -
Cme03g01594 541 MobiDBLite consensus disorder prediction 509 541 - -
Cme03g01594 541 MobiDBLite consensus disorder prediction 1 29 - -
Cme03g01594 541 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 294 335 - -
Cme03g01594 541 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 48 291 - -
Cme03g01594 541 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 372 531 - -
Cme03g01594 541 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 48 291 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01594 Cme-Chr3:24942792 Cme09g01708 Cme-Chr9:21722415 5.01E-117 dispersed
Cme03g01594 Cme-Chr3:24942792 Cme07g00094 Cme-Chr7:577212 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01594 - - csv:101213817 813.142