Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme03g01594 | ATGGCTTTTCGCAACCAGCTCTCTCGGGAACTTCCTCTCCATTACGCGAATCAGCCTCAACAGCAGCAATCGGAACAGCCGCTTTCTGATAACACTCTGCGCTCGATTCTATCTGATCAACTTACGGATCACTCTACAGCTGGCGATGGTTCTAAGTCTGAAAATCCGCTTCAGAGCGCTCCCAATTGGTTGAATAGTGCGTTACTTCGGAATCAAACCCCTCATTCTCACTACTCCGGTGAGACCACGACGACCGCTGCGGATAACGTCAACACCGACTTTCTTAATCTTCACACGACTGCTCCCAATTCGTCCGGTCAATGGCTTTCCCGCCCGATCCTTCATCGCAATCAAAGTGATGTTATCGATGACGTCGCCGATGCTGCCGATGCTATGATTGGCGCTACTGCGACTTTATCGCGTGAATCGGATGATTTGAAGAACAACAGCAGCGGTGGAGGTGGGGAGGGTGTGAATAACAGCGACGATGTGGCGGTTGATAGCGATTGTAATGAAGGTGCTCGTGGTGGAGAAGCGGCGATGAATTGGCAGAATGCGCGGTTTAAGGCTGAAATTCTGGCGCATCCTCTTTACGAGCAGCTGCTCTCTGCTCATGTCGCCTGCCTCCGGATCGCAACGCCGGTGGATCAGTTGCCTAGAATAGATTCTCAGCTTTCTCGGTCTCAGAATGTGGCGGCGAAATACTCGTCGCTGGGCAACGGTTCCCAGTCCATAGTCAGCAATGGAAAAGAGCTTGATCAGTTCATGTACGTTTTAGAGATTCGAGAAAGACATTCTTCTTGGCAGAATCTAGCATGTCTTCCGGCATCGGATATAATCCATGCTTGTACTGTTTTGCCATCGTCGTGTTCTAGTAAACGTACGCATTATGTTTTATTACTTTGTTCTTTTAAAGAACAACTCCAGCAACATGTCCGTGTCCATGCAATGGAAGCAGTATATGCCTGCTGGGAAATTGAGCAATCTCTGCAAAGCTTGACAGGAAATACGGAGATAGCCTTCCTCCTGTTGGAGGACCGGAGGAAAACTGATGGAATGAAGTCAATTGTCCTAACGCTTATTCTTCCAGTCAAGGGTTGTGTTAGTTATGGCGTTTCACCAGGTGTAGGTACGGGTGCTACAATGTCTGATGATGACGAAGACCAAATAGATAGCGATGCTAATTTGTTTGATGGAAGTTTGGAGGGTCATGATACTATGGGTTTTGGTCCCCTTATCCCAACAGAGAGTGAGAGATCCTTGATGGAAAGGGTGAGGCACGAATTGAAGCATGAACTAAAGAATGGATACAAGGAGAAAATTGTAGATATAAGGGAGGAGATCTTGCGAAAAAGGAGAGCAGGTAAACTTCCTGGTGACACCACGTCCGTCTTAAAAGCTTGGTGGCAATCACATTCAAAATGGCCATATCCAACTGTGAGTATGCTGGAGGAAGATAAAGCAAAGTTGGTTCAGGAAACTGGTCTTCAATTAAAGCAGATAAATAACTGGTTTATTAACCAAAGGAAGAGGAATTGGCACACAAATCCTTCAACCTCAACAAACTTGAAGACTAAACGCAAAAGAAGTAATGCAGGTGAAGCAACAGGCAACGACCATCCGTAG | 1626 | 46.74 | MAFRNQLSRELPLHYANQPQQQQSEQPLSDNTLRSILSDQLTDHSTAGDGSKSENPLQSAPNWLNSALLRNQTPHSHYSGETTTTAADNVNTDFLNLHTTAPNSSGQWLSRPILHRNQSDVIDDVADAADAMIGATATLSRESDDLKNNSSGGGGEGVNNSDDVAVDSDCNEGARGGEAAMNWQNARFKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDSQLSRSQNVAAKYSSLGNGSQSIVSNGKELDQFMYVLEIRERHSSWQNLACLPASDIIHACTVLPSSCSSKRTHYVLLLCSFKEQLQQHVRVHAMEAVYACWEIEQSLQSLTGNTEIAFLLLEDRRKTDGMKSIVLTLILPVKGCVSYGVSPGVGTGATMSDDDEDQIDSDANLFDGSLEGHDTMGFGPLIPTESERSLMERVRHELKHELKNGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTVSMLEEDKAKLVQETGLQLKQINNWFINQRKRNWHTNPSTSTNLKTKRKRSNAGEATGNDHP | 541 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 24942792 | 24947763 | + | MELO3C011281.2.1 | Cme03g01594 | 323605 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme03g01594 | 541 | ProSiteProfiles | ELK domain profile. | 428 | 448 | IPR005539 | GO:0003677 | |
Cme03g01594 | 541 | MobiDBLite | consensus disorder prediction | 11 | 29 | - | - | |
Cme03g01594 | 541 | SMART | KNOX2_2 | 241 | 335 | IPR005541 | GO:0003677|GO:0005634 | |
Cme03g01594 | 541 | MobiDBLite | consensus disorder prediction | 527 | 541 | - | - | |
Cme03g01594 | 541 | MobiDBLite | consensus disorder prediction | 142 | 157 | - | - | |
Cme03g01594 | 541 | Pfam | ELK domain | 428 | 449 | IPR005539 | GO:0003677 | |
Cme03g01594 | 541 | ProSiteProfiles | 'Homeobox' domain profile. | 448 | 515 | IPR001356 | GO:0003677 | |
Cme03g01594 | 541 | MobiDBLite | consensus disorder prediction | 142 | 167 | - | - | |
Cme03g01594 | 541 | SMART | KNOX1_2 | 186 | 230 | IPR005540 | GO:0003677|GO:0005634 | |
Cme03g01594 | 541 | Pfam | KNOX2 domain | 296 | 334 | IPR005541 | GO:0003677|GO:0005634 | |
Cme03g01594 | 541 | Pfam | Homeobox KN domain | 468 | 511 | IPR008422 | GO:0003677|GO:0006355 | |
Cme03g01594 | 541 | Gene3D | - | 449 | 514 | - | - | |
Cme03g01594 | 541 | CDD | homeodomain | 451 | 516 | IPR001356 | GO:0003677 | |
Cme03g01594 | 541 | SMART | HOX_1 | 450 | 519 | IPR001356 | GO:0003677 | |
Cme03g01594 | 541 | SMART | ELK_2 | 428 | 449 | IPR005539 | GO:0003677 | |
Cme03g01594 | 541 | MobiDBLite | consensus disorder prediction | 509 | 526 | - | - | |
Cme03g01594 | 541 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 294 | 335 | - | - | |
Cme03g01594 | 541 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 372 | 531 | - | - | |
Cme03g01594 | 541 | Pfam | KNOX1 domain | 189 | 228 | IPR005540 | GO:0003677|GO:0005634 | |
Cme03g01594 | 541 | SUPERFAMILY | Homeodomain-like | 450 | 518 | IPR009057 | - | |
Cme03g01594 | 541 | MobiDBLite | consensus disorder prediction | 509 | 541 | - | - | |
Cme03g01594 | 541 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - | |
Cme03g01594 | 541 | PANTHER | CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN | 294 | 335 | - | - | |
Cme03g01594 | 541 | PANTHER | CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN | 48 | 291 | - | - | |
Cme03g01594 | 541 | PANTHER | CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN | 372 | 531 | - | - | |
Cme03g01594 | 541 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 48 | 291 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme03g01594 | Cme-Chr3:24942792 | Cme09g01708 | Cme-Chr9:21722415 | 5.01E-117 | dispersed | |
Cme03g01594 | Cme-Chr3:24942792 | Cme07g00094 | Cme-Chr7:577212 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme03g01594 | - | - | csv:101213817 | 813.142 |