Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01604 ATGGAGTTTTTTCACCTACCCATCACAATATTCTCATCAATTTCTGTTCTCCTCCTACTCCTCATCTTTCTTCTCCTCTCACAAAATTACAACTTCAAATTTTTCACTCCACTTAATTCCACGCACTTGCACCGCCAATTTCCTCCTATTTCCGATCAATTCCGAGCCCTTCACTTCCCACAAACAGCCCCTTCTCGCGTTACACTGAGAAAAGTGAGGAAAACTTGGCTGAGTCGTGAAGAAAAGCTGGAACTAGGGCTCGCACAGGCTAGGGCTTCTATTCGCAAAGCGGCTAATGACTCGAACCTCTCCTCTTCCTCCGTCGATTACGTTCCTTCTTCTTCTTCAGTTTATCACAATCCCCGCGCTTTTTATCAAAGCTACGTGGAAATGGAGAAAAGATTTAAAGTGTACGTGTACCCAGAAGGGGAATTGCCAATAACACATGACGGGCCGTGTAAAAACATATACACAATTGAAGGGAGGTTCATACATGAAATGGAGGATGGTGGAAACGGGTTCAGAACGGTGGATCCGGGTCGAGCTCATGTTTTGTTTATGCCGTTTAGTGTGGCTTGGATGGTGAAGTACTTATATAAAGCTGGAAGTTATGATCAAACGCCGTTGCGGATGTTTGTGAGTGACTACGTGGAGGTGGTGTCCAAGAAATACCCGTTTTGGAATAAAACTAATGGGGCTGACCATTTCATCCTTGCATGCCATGATTGGGGTCCAATAGCAACAGAAGGAAACCGATTCCTATACAACACATCAATCCGTGTCCTATGTAATGCCAATTCCTCCGAAGGCTTCAACCCACAAAAAGACGTCAGCCTCCCGGAGATCCACCTCTACGACGGCGACATTTCCCCCAAACTCCTCTCTTCAAACTCCCACCACCACCGTCCACACCTCGCATTCTTCGCCGGCGGTCTCCACGGTCCAATCAGACCCATACTCCTAAACCATTGGAAAAACCGAACCCACACCAACATCCACGTCTACGAGTACCTCCCGACACAACTCGACTACTACGACCAAATGCTTCAATCCAGATTCTGCCTCTGTCCCAGCGGCTACGAGGTCGCCAGTCCCAGAATTGTCGAGGCCATTTATGCCGAATGCGTTCCCGTGATTATTTCGGAGCGTTATGTTTTGCCCTTCAGCGATGTGTTGAGATGGAAAGGGTTTTCGATTGAGGTTAGTGCGTCGGAAATTCCGAGGTTGAAGGAGATTTTGATGGGTGTGTCGGATGAAAAGTATGAGAAACTTAAACAAGGTTTGAGGACTGTGAGGAAGCACTTTGTGCTGAATCGTCCGGCTAAGAGGTTTGATGCTTTTCATATGATTTTGCACTCTGTTTGGCTTCGGAGATTAAATGTAAAACTTGCTTAA 1395 46.52 MEFFHLPITIFSSISVLLLLLIFLLLSQNYNFKFFTPLNSTHLHRQFPPISDQFRALHFPQTAPSRVTLRKVRKTWLSREEKLELGLAQARASIRKAANDSNLSSSSVDYVPSSSSVYHNPRAFYQSYVEMEKRFKVYVYPEGELPITHDGPCKNIYTIEGRFIHEMEDGGNGFRTVDPGRAHVLFMPFSVAWMVKYLYKAGSYDQTPLRMFVSDYVEVVSKKYPFWNKTNGADHFILACHDWGPIATEGNRFLYNTSIRVLCNANSSEGFNPQKDVSLPEIHLYDGDISPKLLSSNSHHHRPHLAFFAGGLHGPIRPILLNHWKNRTHTNIHVYEYLPTQLDYYDQMLQSRFCLCPSGYEVASPRIVEAIYAECVPVIISERYVLPFSDVLRWKGFSIEVSASEIPRLKEILMGVSDEKYEKLKQGLRTVRKHFVLNRPAKRFDAFHMILHSVWLRRLNVKLA 464
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 24990815 24994577 + MELO3C011272.2.1 Cme03g01604 323615

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01604 464 PANTHER XYLOGALACTURONAN BETA-1,3-XYLOSYLTRANSFERASE 66 462 - -
Cme03g01604 464 PANTHER EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED 66 462 IPR004263 GO:0006486|GO:0016757
Cme03g01604 464 Pfam Exostosin family 132 414 IPR040911 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01604 - - - csv:101206439 879.396
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01604 Cme-Chr3:24990815 Cme08g01242 Cme-Chr8:8857511 8.20E-145 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g503 Blo01g01393 . . . . Bpe02g00556 . . Cmo05g00377 . . Cma05g00375 . . Sed01g1382 . . Bhi04g00016 Tan02g2733 Cmetu03g0444 . Hepe10g0241 . Lcy13g1800 . . . . . . . Cone4ag1775 Cone7ag1691 . . . . . Cme03g01604 . . . . . . . . . . . . . . Car05g00319 Cpe11g00321 . . . . . . . . Cla08g01344 Cam08g1807 Cec08g1386 Cco08g1515 Clacu08g1500 . Cre08g1287 Lsi08g01216 . Chy03g01109 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012011 0 1 1 0 1 1 1 1 1 1 2 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 30