Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01606 ATGTTTGCTGCAGAAAATGGTCTTAAGGGAGACCCCAGGCTTCAAGGCATCTCTCAAGCCATTAGAGTTGTTCCTCACTTCCCTAAGCCTGGGATAATGTTTCAAGATATTACTACGTTGTTGCTTGATCATAAGGCGTTTAAGGATACTGTCGACATTTTTGTAGATCGTTACAGGGGAATGAACATCTCTGTTGTTGCTGGTGTAGAAGCCAGAGGATTCATGTTTGGTCCTTCGATTGCTTTATCCATTGGAGCAAAGTTCGTTCCTTTACGCAAACCCAGAAAGCTTCCTGGTGAAGTAATTTCAGAAGCTTATGATTTGGAGTATGGAACAGATTGCTTAGAAATGCAAATAGATGCTGTGAAAACTGGGGAACGTGCATTGGTTATTGATGATTTGGTGGCCACTGGTGGAACCTTATCGGCGGCAATCAGGCTTCTGGAACGGATGGGTGCTGAAGTGGTTGAATGTGCTTGTGTTGTCGGATTGCGCGAAGTTAAGGGACAGCGTAGGCTGGATGGAAAGCCACTTTATATCCTTGTTGAGCCACGTCAATTGGATGAATGTTTCTAA 576 44.1 MFAAENGLKGDPRLQGISQAIRVVPHFPKPGIMFQDITTLLLDHKAFKDTVDIFVDRYRGMNISVVAGVEARGFMFGPSIALSIGAKFVPLRKPRKLPGEVISEAYDLEYGTDCLEMQIDAVKTGERALVIDDLVATGGTLSAAIRLLERMGAEVVECACVVGLREVKGQRRLDGKPLYILVEPRQLDECF 191
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 25003335 25005628 - MELO3C011270.2.1 Cme03g01606 323617

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01606 191 PANTHER ADENINE PHOSPHORIBOSYLTRANSFERASE 5-LIKE ISOFORM X1 1 188 - -
Cme03g01606 191 SUPERFAMILY PRTase-like 18 176 IPR029057 -
Cme03g01606 191 Pfam Phosphoribosyl transferase domain 57 165 IPR000836 -
Cme03g01606 191 CDD PRTases_typeI 51 183 IPR000836 -
Cme03g01606 191 Hamap Adenine phosphoribosyltransferase [apt]. 17 184 IPR005764 GO:0003999|GO:0005737|GO:0006168
Cme03g01606 191 TIGRFAM apt: adenine phosphoribosyltransferase 18 182 IPR005764 GO:0003999|GO:0005737|GO:0006168
Cme03g01606 191 Gene3D - 5 184 IPR029057 -
Cme03g01606 191 PANTHER ADENINE PHOSPHORIBOSYLTRANSFERASE 1 188 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01606 K00759 APRT, apt; adenine phosphoribosyltransferase [EC:2.4.2.7] - csv:101215432 378.637
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01606 Cme-Chr3:25003335 Cme03g02097 Cme-Chr3:28277635 5.93E-91 dispersed
Cme03g01606 Cme-Chr3:25003335 Cme06g02603 Cme-Chr6:33293224 5.17E-88 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g497 . . . . Bpe02g01252 . . . Cmo05g00378 Cmo12g00294 . Cma05g00376 . Car12g00327 Sed01g1380 . . Bhi04g00941 Tan02g2731 Cmetu03g1736 . Hepe10g0243 . Lcy13g1798 . . . . . . . . . Cone17ag1015 Cone20ag0355 . . . Cme03g01606 . Blo18g00019 Bda01g01004 Bda13g01256 Bpe14g00584 . Bma01g01273 . . . . . Cma12g00344 . Car05g00320 . . . . . . . . . Cla08g01342 Cam08g1804 Cec08g1383 Cco08g1511 Clacu08g1498 . Cre08g1285 Lsi08g01213 . Chy03g01111 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme03g01606 . 33 189 PRT Gene Family AT1G80050 79.0 1.9e-66 248.8
Cme06g02603 . 32 167 PRT Gene Family AT1G80050 78.7 4.2e-58 221.1
Cme03g02097 . 108 257 PRT Gene Family AT1G80050 70.7 6.6e-56 213.8
Cme09g01640 . 30 210 PRT Gene Family AT1G80050 54.5 1.9e-47 185.7
Cme03g01606 . 1 148 PRT Gene Family AT5G11160 79.7 7.6e-63 236.9
Cme03g02097 . 84 223 PRT Gene Family AT5G11160 73.6 2.6e-55 211.8
Cme06g02603 . 10 147 PRT Gene Family AT5G11160 72.5 1.9e-53 205.7
Cme09g01640 . 8 164 PRT Gene Family AT5G11160 55.7 2.0e-42 169.1
Cme03g02097 . 79 260 PRT Gene Family AT1G27450 81.9 1.2e-80 296.2
Cme06g02603 . 6 167 PRT Gene Family AT1G27450 77.8 7.8e-69 256.9
Cme03g01606 . 11 183 PRT Gene Family AT1G27450 68.8 3.6e-66 248.1
Cme09g01640 . 7 210 PRT Gene Family AT1G27450 55.1 4.0e-57 218.0
Cme11g00452 . 110 594 PRT Gene Family AT2G16570 85.0 5.3e-241 830.5
Cme11g00452 . 109 594 PRT Gene Family AT4G34740 85.4 1.1e-241 832.8
Cme11g00452 . 114 567 PRT Gene Family AT4G38880 75.4 3.4e-197 684.9
Cme03g02097 . 79 260 PRT Gene Family AT1G27450 81.9 1.2e-80 296.2
Cme06g02603 . 6 167 PRT Gene Family AT1G27450 77.8 7.8e-69 256.9
Cme03g01606 . 11 183 PRT Gene Family AT1G27450 68.8 3.6e-66 248.1
Cme09g01640 . 7 210 PRT Gene Family AT1G27450 55.1 4.0e-57 218.0
Cme03g01606 . 33 189 PRT Gene Family AT1G80050 79.0 1.9e-66 248.8
Cme06g02603 . 32 167 PRT Gene Family AT1G80050 78.7 4.2e-58 221.1
Cme03g02097 . 108 257 PRT Gene Family AT1G80050 70.7 6.6e-56 213.8
Cme09g01640 . 30 210 PRT Gene Family AT1G80050 54.5 1.9e-47 185.7
Cme06g02603 . 6 99 PRT Gene Family AT4G22570 88.3 1.7e-44 175.3
Cme03g02097 . 83 175 PRT Gene Family AT4G22570 80.6 1.7e-39 158.7
Cme03g01606 . 11 100 PRT Gene Family AT4G22570 77.8 4.5e-37 150.6
Cme09g01640 . 6 124 PRT Gene Family AT4G22570 63.9 4.5e-37 150.6
Cme06g02603 . 7 98 PRT Gene Family AT4G12440 88.0 2.1e-41 164.9
Cme03g02097 . 79 174 PRT Gene Family AT4G12440 79.2 3.8e-38 154.1
Cme03g01606 . 1 148 PRT Gene Family AT5G11160 79.7 7.6e-63 236.9
Cme03g02097 . 84 223 PRT Gene Family AT5G11160 73.6 2.6e-55 211.8
Cme06g02603 . 10 147 PRT Gene Family AT5G11160 72.5 1.9e-53 205.7
Cme09g01640 . 8 164 PRT Gene Family AT5G11160 55.7 2.0e-42 169.1
Cme03g01066 . 20 205 PRT Gene Family AT1G71750 62.9 4.6e-67 251.1
Cme01g01088 . 16 468 PRT Gene Family AT1G55810 85.7 1.9e-225 778.5
Cme06g01664 . 19 482 PRT Gene Family AT1G55810 73.5 1.0e-199 693.0
Cme01g01088 . 65 467 PRT Gene Family AT3G27440 77.2 1.5e-184 642.5
Cme06g01664 . 80 482 PRT Gene Family AT3G27440 75.2 2.5e-179 625.2
Cme06g01664 . 1 482 PRT Gene Family AT3G27190 86.1 2.5e-247 851.3
Cme01g01088 . 3 467 PRT Gene Family AT3G27190 74.1 2.5e-207 718.4
Cme08g02442 . 7 229 PRT Gene Family AT3G53900 77.6 2.7e-103 372.1
Cme01g01088 . 1 468 PRT Gene Family AT4G26510 83.8 2.2e-232 801.6
Cme06g01664 . 11 482 PRT Gene Family AT4G26510 75.2 3.4e-209 724.5
Cme06g01664 . 1 482 PRT Gene Family AT5G40870 86.3 2.7e-246 847.8
Cme01g01088 . 44 470 PRT Gene Family AT5G40870 80.1 5.6e-207 717.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000311 4 6 3 5 5 4 7 4 4 4 4 4 7 4 4 7 4 6 1 4 4 4 4 5 4 4 4 10 6 3 139